View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20640_low_2 (Length: 523)
Name: NF20640_low_2
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20640_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 5650028 - 5650523
Alignment:
| Q |
18 |
actttgtaactatatttgattattttccataaaagattccaaccttttacaatttcacacattcatttttaatatactaccattttctacacacaatgct |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5650028 |
actttctaactatatttgattattttccataaaagattctaaccttttacaatttcacacattcatttttaatatactaccattttctacacacaatgct |
5650127 |
T |
|
| Q |
118 |
atgcagctttttcgagaagaacatgactattaatattattaagagtannnnnnnnagaggatgggtattaagagaaatgttggtgaataatgataccctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5650128 |
atgcagctttttcgagaagaacatgactattaatattagtaagagtatttttttcagaggatgggtattaagagaaatgttggtgaataatgataccctt |
5650227 |
T |
|
| Q |
218 |
gttactcattcaacacaattactaaatttatatttatgaaaaaa-tatgattttttcttaggataattaattttgtgtgttgctaaaatattttaacaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
5650228 |
gttactcattcaacacaattactaaatttatatttatgaaaaaaatatgaatttttcttaggataatta-ttttgtgtgttactaaaatattttaacaaa |
5650326 |
T |
|
| Q |
317 |
aaacataattaaaggacaattttaaaagcttagatgcattattaacaaatttattgtattaccaatatttttctaaccctatggtaattaggatatttga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
5650327 |
aaacataattaaaggacaattttaaaagcttagatgcattattaacaaatttattgaattaccaatatttttctaa-cctatggtaattagaatatttga |
5650425 |
T |
|
| Q |
417 |
ccctcaatggtgtccaaagtctttccatgactaagactctctggattcgctattagacttactttcaagttggtatcaatatatttcatctttctttt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
5650426 |
ccctcaatggtgtccaaagtctttccatgactaagattctctgggttcgctattagacttactttcgagttggtatcaatatatttgatctttctttt |
5650523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University