View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20640_low_5 (Length: 337)
Name: NF20640_low_5
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20640_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 37493899 - 37493590
Alignment:
| Q |
17 |
cactttcaaagtttaattgaacatcatccacattgaaaccttcacatagattggtcccctcatgaattattagatccttaacatcatggaatccttgaag |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493899 |
cactttcaaagtttaattgaatatcatccacattgaaaccttcacatagactggtcccctcatgaattattagatccttaacatcatggaatccttgaag |
37493800 |
T |
|
| Q |
117 |
ctaatgtgttaaaagaagaaaaatatttggtgtcaattttggttcagcacaacagttaccatattactactaaactaatcatatcaacatgagcatatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493799 |
ctaatgtgttaaaagaagaaaaatatttggtgtcaattttggttcagcacaacagttaccatattactactaaactaatcatatcaacatgagcatatta |
37493700 |
T |
|
| Q |
217 |
atcacttatcaacaattatacttagctcagatcattcatcgatctttaactcgtctaaactaaagcacataaaacacatatgacatatatgcatttttaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493699 |
atcacttatcaacaattatacttagctcagatcattcatcgttctttaactcgtctaaactaaagcacataaaacacatatgacatatatgcatttttaa |
37493600 |
T |
|
| Q |
317 |
ctttattcat |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
37493599 |
ctttattcat |
37493590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University