View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20640_low_8 (Length: 250)
Name: NF20640_low_8
Description: NF20640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20640_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 47760496 - 47760732
Alignment:
| Q |
14 |
gaataaaaggtaagtaataacttgcaagaaacaattgccatgctgatattgctctctgtcttggaataattaacaagtaaccaacaaatataggattgaa |
113 |
Q |
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| T |
47760496 |
gaataaaaggtaagtaataacttgcaagaaacaattgccatgctgatattgctctctgtcttggaataattaacaagtaaccaacaaatataggattgaa |
47760595 |
T |
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| Q |
114 |
gctttaatttggatatgaaagtcggtcatttagtttgacattcgtgaaatgatttgttgactaaaatatgtggcttgagaccaagcttctagtcttctat |
213 |
Q |
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| T |
47760596 |
gctttaatttggatatgaaagtcggtcatttagtttgacattcgtgaaatgatttgttgactaaaatatgtggtttgagaccaagcttctagtcttctat |
47760695 |
T |
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| Q |
214 |
cattaaatttgtgggaaaggtcatgtgagtgatgttt |
250 |
Q |
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| T |
47760696 |
cattaaatttgtgggaaaggtcatgtgagtgatgttt |
47760732 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 47746270 - 47746399
Alignment:
| Q |
121 |
tttggatatgaaagtcggtcatttagtttgacattcgtgaaatgatttgttgactaaaatatgtggcttgagaccaagcttctagtcttctatcattaaa |
220 |
Q |
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| T |
47746270 |
tttggatatgaaagtcaatcagttaatttgaattgggtgaaatgatttgttgagtaaaatatgtggtttgagacaaagcttctagtcttttatcattcga |
47746369 |
T |
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| Q |
221 |
tttgtgggaaaggtcatgtgagtgatgttt |
250 |
Q |
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| T |
47746370 |
tttgtgtgaaaggtcgtttgagtaatgttt |
47746399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 47718375 - 47718566
Alignment:
| Q |
14 |
gaataaaaggtaagtaataacttgcaagaaacaattgccatgc-tg-atattgctctctgtcttggaataattaacaagtaaccaacaaatataggattg |
111 |
Q |
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| T |
47718375 |
gaataaaaggaaaataatagcttgctagaaacagttgtcattcgtgtatattgatctctgtcttggaacaag-aacaggtaattaagaaatggaggattg |
47718473 |
T |
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| Q |
112 |
aagctttaatttggatatgaaagtcggtcatttagtttgacattcgtgaaatgatttgttgactaaaatatgtggcttgagaccaagcttctagtctt |
209 |
Q |
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| T |
47718474 |
aagcttt-----ggatatgaaagtcaatcagttaatttgaactgggtgaaatgatttgttgagtaaaatatgtggtttgagacaaagcttcgagtctt |
47718566 |
T |
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