View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20641_high_1 (Length: 594)

Name: NF20641_high_1
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20641_high_1
NF20641_high_1
[»] chr6 (1 HSPs)
chr6 (15-578)||(21780152-21780715)
[»] chr3 (15 HSPs)
chr3 (350-578)||(23146472-23146700)
chr3 (350-576)||(23039597-23039823)
chr3 (377-576)||(23036749-23036946)
chr3 (15-109)||(23036509-23036603)
chr3 (15-102)||(23140385-23140472)
chr3 (15-109)||(23039380-23039474)
chr3 (15-102)||(23024611-23024698)
chr3 (18-109)||(23146262-23146353)
chr3 (15-102)||(23149097-23149184)
chr3 (15-109)||(23017401-23017495)
chr3 (15-109)||(23033038-23033132)
chr3 (389-521)||(23017847-23017977)
chr3 (389-513)||(23033451-23033575)
chr3 (413-506)||(23149496-23149589)
chr3 (415-507)||(23024891-23024983)
[»] scaffold0554 (2 HSPs)
scaffold0554 (412-578)||(5738-5901)
scaffold0554 (15-109)||(6321-6415)
[»] chr1 (2 HSPs)
chr1 (26-107)||(15885531-15885612)
chr1 (20-104)||(12637342-12637426)
[»] scaffold0059 (1 HSPs)
scaffold0059 (20-104)||(62497-62581)


Alignment Details
Target: chr6 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 15 - 578
Target Start/End: Original strand, 21780152 - 21780715
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagcagaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21780152 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagcagaga 21780251  T
Q  115 aagatagaatttaaaggaaatgatatgagatatagtactgcatctatattctatcatgtttattagctgaagcgaaaataataatcggaaacatgaaaag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21780252 aagatagaatttaaaggaaatgatatgagatatagtactgcatctatattctatcatgtttattagctgaagcgaaaataataatcagaaacatgaaaag 21780351  T
Q  215 taagcaggcccttaatagccaagttgtagatatcagatagcatcgaatactacgaagtacaaaagtcgtgtgcgaaatatttcacagctttaaagatttc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21780352 taagcaggcccttaatagccaagttgtagatatcagatagcatcgaatactacgaagtacaaaagtcgtgtgcgaaatatttcacagctttaaagatttc 21780451  T
Q  315 atatggagatataggtcgaacagttttagatattcatttaaattttactacagtaaaaaatgttttcttcttcgaagtatttggaagagattaattggct 414  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21780452 atatggagatataggtcgaacagttttagatattcagttaaattttactacagtaaaaaatgttttcttcttcgaagtatttggaagagattaattggct 21780551  T
Q  415 taccattattatggctttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatcttcttctact 514  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21780552 taccattattatggccttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatcttcttctact 21780651  T
Q  515 tcaccttcatcttctttcggttttgtgtgctttgcctctttatggtccttgatgatgttttcaa 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21780652 tcaccttcatcttctttcggttttgtgtgctttgcctctttatggtccttgatgatgttttcaa 21780715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 350 - 578
Target Start/End: Original strand, 23146472 - 23146700
Alignment:
Q  350 atttaaattttactacagtaaaaaatgttttcttcttcgaa-gtatttggaagagattaattggcttaccattattatggctttgatattgtcttttgtt 448  Q
    ||||||||||||||  |||||| ||  |||||| ||| ||| |||||||||||||||||||| ||||||||  |||||||| |||||||||| |||||||    
T  23146472 atttaaattttactggagtaaacaagtttttct-ctttgaatgtatttggaagagattaatttgcttaccaggattatggccttgatattgttttttgtt 23146570  T
Q  449 aaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatcttcttctacttcaccttcatcttctttcggttttgtgtgctttg 548  Q
    |||| ||| ||| |||||||||| |||||||||||||||||||||||||  |||||||||||||||| ||||| ||| ||||| | |||||||| ||||     
T  23146571 aaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctatcagatcttcttctactttaccttgatcatctttggcttttgtgtactttt 23146670  T
Q  549 cctctttatggtccttgatgatgttttcaa 578  Q
    |||||||||| || ||||||||||||||||    
T  23146671 cctctttatgctcattgatgatgttttcaa 23146700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 350 - 576
Target Start/End: Original strand, 23039597 - 23039823
Alignment:
Q  350 atttaaattttactacagtaaaaaatgttttcttcttcgaa-gtatttggaagagattaattggcttaccattattatggctttgatattgtcttttgtt 448  Q
    ||||||||||||||  |||||| ||  |||||| ||| ||| ||||||| ||||| |||||| ||||||||  |||||||| |||||||||| |||||||    
T  23039597 atttaaattttactggagtaaacaagtttttct-ctttgaatgtatttgaaagaggttaatttgcttaccaggattatggccttgatattgttttttgtt 23039695  T
Q  449 aaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatcttcttctacttcaccttcatcttctttcggttttgtgtgctttg 548  Q
    |||| ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| | |||||||| ||||     
T  23039696 aaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatcttcttctactttaccttgatcatctttggcttttgtgtactttt 23039795  T
Q  549 cctctttatggtccttgatgatgttttc 576  Q
    |||||||||| || ||||||||||||||    
T  23039796 cctctttatgctcattgatgatgttttc 23039823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 377 - 576
Target Start/End: Original strand, 23036749 - 23036946
Alignment:
Q  377 ttttcttcttcgaagtatttggaagagattaattggcttaccattattatggctttgatattgtcttttgttaaggaaaaatccaggttgctaccatcct 476  Q
    |||||||||||||||||||||||| || |||||| |||||||||||||||||| |||||||||| |||||| |||||||  ||  |||| || |||||||    
T  23036749 ttttcttcttcgaagtatttggaa-ag-ttaattcgcttaccattattatggccttgatattgttttttgtcaaggaaaggtcttggtttctgccatcct 23036846  T
Q  477 catattttaagagaacgtctacgagatcttcttctacttcaccttcatcttctttcggttttgtgtgctttgcctctttatggtccttgatgatgttttc 576  Q
    | || |||||||||||||||||||||||||||||||||  ||||| ||| ||||| | |||||||| |||| |||||||||| || ||||||||||||||    
T  23036847 cgtaatttaagagaacgtctacgagatcttcttctactctaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgttttc 23036946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 23036509 - 23036603
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc 109  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23036509 attattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaaaagtagc 23036603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23140385 - 23140472
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaa 102  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23140385 attattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa 23140472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 23039380 - 23039474
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc 109  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  23039380 attattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgtctcacctccagcaccaaaaacgtcctgaaaagtagc 23039474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23024611 - 23024698
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaa 102  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23024611 attattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaaatgtcctgaa 23024698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 23146262 - 23146353
Alignment:
Q  18 attcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc 109  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  23146262 attcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtctcacctccagcagcaaaaatgtcctgtaaagtagc 23146353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 23149097 - 23149184
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaa 102  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  23149097 attattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaa 23149184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 23017401 - 23017495
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc 109  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  23017401 attattcttggattccttatcatttctatcattgcccaatctgtggtgcttgctgatgtctcacctccaccaccgaaaatgtcctgaaaagtagc 23017495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 23033038 - 23033132
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc 109  Q
    ||||||| | |||| |||| |||||||  ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  23033038 attattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaaatgtcctgaaaagtagc 23033132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 389 - 521
Target Start/End: Original strand, 23017847 - 23017977
Alignment:
Q  389 aagtatttggaagagattaattggcttaccattattatggctttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaaga 488  Q
    ||||||||||||||| ||| |   |||||||  |||||||| |||||||||||||||||||| || |||||  |||  ||||||||||||||||||||||    
T  23017847 aagtatttggaagaggttacta--cttaccaagattatggccttgatattgtcttttgttaatgagaaatcttggtcactaccatcctcatattttaaga 23017944  T
Q  489 gaacgtctacgagatcttcttctacttcacctt 521  Q
    ||| |||||| ||||||||| |||| |||||||    
T  23017945 gaatgtctaccagatcttctgctacctcacctt 23017977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 23033451 - 23033575
Alignment:
Q  389 aagtatttggaagagattaattggcttaccattattatggctttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaaga 488  Q
    ||||||||||||||| ||| |  ||||||||  ||||| || ||||||||||||||||||||| | |||||  |||  ||||||||||||||||||||||    
T  23033451 aagtatttggaagagtttattacgcttaccaagattatagccttgatattgtcttttgttaagaagaaatcttggtcactaccatcctcatattttaaga 23033550  T
Q  489 gaacgtctacgagatcttcttctac 513  Q
    ||| |||||| ||||||||| ||||    
T  23033551 gaatgtctaccagatcttctactac 23033575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 506
Target Start/End: Original strand, 23149496 - 23149589
Alignment:
Q  413 cttaccattattatggctttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatctt 506  Q
    |||||||  |||||||| |||||||||||||| || ||| |||| |||  |||||| ||||| |||||||||| |||||| ||||| |||||||    
T  23149496 cttaccaagattatggccttgatattgtctttggtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt 23149589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 507
Target Start/End: Original strand, 23024891 - 23024983
Alignment:
Q  415 taccattattatggctttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatcttc 507  Q
    |||||| |||||||| |||||||||||| | |||||| |||| |||  |||  | ||||| | ||||||||||||||| ||||| ||||||||    
T  23024891 taccatgattatggccttgatattgtctatagttaagaaaaattccttgttattgccatcttgatattttaagagaacatctaccagatcttc 23024983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 412 - 578
Target Start/End: Complemental strand, 5901 - 5738
Alignment:
Q  412 gcttaccattattatggctttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatcttcttct 511  Q
    ||||||||| || |||||||||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||||||||||  ||||||||||      
T  5901 gcttaccatgataatggctttgatattgtcttttgttaaggaaaactccttgttgctaccatcttcatattttaagagaacgtctaatagatcttctt-- 5804  T
Q  512 acttcaccttcatcttctttcggttttgtgtgctttgcctctttatggtccttgatgatgttttcaa 578  Q
     ||||||||||||| |||||   ||||  ||   |||| |||||||| || ||||||||||||||||    
T  5803 -cttcaccttcatcctcttttaattttccgtatcttgcttctttatgctcattgatgatgttttcaa 5738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 6415 - 6321
Alignment:
Q  15 attattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagtagc 109  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||    
T  6415 attattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgtatcacctccagcaccaaaaatgtcctaaaaagtagc 6321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 15885612 - 15885531
Alignment:
Q  26 atcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaagta 107  Q
    |||||||||||  ||| ||||||||||| |||||||| |    ||||| || ||||||||||||||||||||||||||||||    
T  15885612 atcccttaccaactctgccattgcccaaactatggtggtactcgatgtatctcctccagcaccaaacatgtcctgaaaagta 15885531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 12637342 - 12637426
Alignment:
Q  20 tcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaa 104  Q
    ||||||||||||||| |  ||| ||||||||||| |||||||  | | |||||| ||||||||||||||||  ||||||||||||    
T  12637342 tcttggatcccttactaactctgccattgcccaaactatggtagtggatgatgtttcacctccagcaccaatgatgtcctgaaaa 12637426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 62497 - 62581
Alignment:
Q  20 tcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaacatgtcctgaaaa 104  Q
    ||||||||| |||||||  ||| ||||||||||| ||| | |    |||||||| ||||||||||||||||||||||||||||||    
T  62497 tcttggatctcttaccaactctgccattgcccaaactacgctcaaagctgatgtatcacctccagcaccaaacatgtcctgaaaa 62581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University