View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20641_high_15 (Length: 227)
Name: NF20641_high_15
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20641_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 35961326 - 35961101
Alignment:
| Q |
6 |
acctaaaagacacttataataaatatttgattatttggatggtttcttgcaattccgcaaggactaaaaccaattttattaaagttaacnnnnnnnnnn- |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35961326 |
acctaaaagacacttataataaatatttgattatttggatggtttcttgcaattccgcaaggactaaaaccaattttattaaagttaacaaaaaaaaaaa |
35961227 |
T |
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| Q |
105 |
---gaggtgttttacattttatatttatttaggggatgagatgttttacttataaagtgataaaatttgtttgttacatggtatttaaggagatagatta |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35961226 |
gaagaggtgttttacattttatatttatttaggggatgagatgttttacttataaagtgatcaaatttgtttgttacatggtatttaaggagatagatta |
35961127 |
T |
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| Q |
202 |
tggctgaagttcaaaaaattgtgtat |
227 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35961126 |
tggctgaagttcaaaaaattgtgtat |
35961101 |
T |
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