View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20641_high_2 (Length: 556)

Name: NF20641_high_2
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20641_high_2
NF20641_high_2
[»] chr4 (1 HSPs)
chr4 (1-556)||(5139720-5140280)


Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 5140280 - 5139720
Alignment:
Q  1 tgttgttcaaatatcactattttcttttctttt-ctgatnnnnnnnnnnttaa-taagaatgtgtatgaaaaataaaagttgttgaattgctcnnnnnnn 98  Q
    ||||||||||||||||||||||| ||||||||| |||||          |||| |||||||||||||||||||||||||||||||||||||||           
T  5140280 tgttgttcaaatatcactatttttttttctttttctgataaaaaaaaaattaaataagaatgtgtatgaaaaataaaagttgttgaattgctcaaaaaaa 5140181  T
Q  99 nnnnnta---ttgttgaaatatagttggtaaaaattcaatcttgatgtgagcataaccaaaacacacgcagtataccaaaaccatcaaacttatccctat 195  Q
          |   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5140180 aaaaaaaaattagttgaaatatagttggtaaaaattcaatcttgatgtgagcataaccaaaacacacgcagtataccaaaaccatcaaacttatccctat 5140081  T
Q  196 gacagacacaacgaacaaaactgtcgccacgtggcgtaacatccccaatttaaccaccatctccaacgacgccgtttcacccaaccaccttttcaacaac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5140080 gacagacacaacgaacaaaactgtcgccacgtggcgtaacatccctaatttaaccaccatctccgacgacgccgtttcacccaaccaccttttcaacaac 5139981  T
Q  296 tccaccttcactttcaccgacgcaaccaccaccattccttccaaattcgccaccgtctccgcctcccaaaccaaaccgaacaacgaattcgccctgacgc 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  5139980 tccaccttcactttcaccgacgcaaccaccaccattccttccaaattcgccaccgtctccgcctcccaaaccaaaccgaacaacgaattcgcgcctacgc 5139881  T
Q  396 cggctcagcttcttaaccacccgatcgccgtcgtcgcacttgttcccaaagatgctgcattgtttctcgccggtgctgttgccggagctgctgctaaaac 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5139880 cggctcagcttcttaaccacccgatcgccgtcgtcgcacttgttcccaaagatgctgcattgtttctcgccggtgctgttgccggagctgctgctaaaac 5139781  T
Q  496 cgttactgctccactcgatcgaatcaagcttctcatgcaggtaacggcattgtttttctct 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5139780 cgttactgctccactcgatcgaatcaagcttctcatgcaggtaacggcattgtttttctct 5139720  T

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