View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20641_high_3 (Length: 428)

Name: NF20641_high_3
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20641_high_3
NF20641_high_3
[»] chr6 (7 HSPs)
chr6 (18-410)||(30946506-30946898)
chr6 (170-399)||(30962298-30962533)
chr6 (184-376)||(30931969-30932169)
chr6 (170-236)||(30956874-30956940)
chr6 (59-109)||(30956786-30956836)
chr6 (285-339)||(30956938-30956990)
chr6 (26-98)||(30962164-30962236)


Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 30946506 - 30946898
Alignment:
Q  18 atgacaaaaccaaaatttgctcagtttacatttacaataccaagaatgaaatacaaaatagaattaaaggttacaagcatatacggtcgacaatcgactg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30946506 atgacaaaaccaaaatttgctcagtttacatttacaataccaagaatgaaatacaaaatagaattaaaggttacaagcatatacggtcgacaatcaactg 30946605  T
Q  118 tatcaaaagttgttgcttttattgcaagagatgtagataatacataaaaattatatgattatgtaaactcaaagtggtaaacttcaaagaatagacaagt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30946606 tatcaaaagttgttgcttttattgcaagagatgtagataatacataaaaattatataattatgtaaactcaaagtggtaaacttcaaagaatagacaagt 30946705  T
Q  218 ttcttgcaagatgtctacattaccaatatccattactattttcgtatggtgacaatggctatagatcacaagtggctcaaaacagatgtggtaaaatcac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946706 ttcttgcaagatgtctacattaccaatatccattactattttcgtatggtgacaatggctatagatcacaagtggctcaaaacagatgtggtaaaatcac 30946805  T
Q  318 taaaatgaatcgtattactataagagattgaccggccctcaaaattatgtctagaaccaatgaggcactttaagatgacttaaaataattgta 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946806 taaaatgaatcgtattactataagagattgaccggccctcaaaattatgtctagaaccaatgaggcactttaagatgacttaaaataattgta 30946898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 170 - 399
Target Start/End: Original strand, 30962298 - 30962533
Alignment:
Q  170 atatgattatgtaaactcaaagtggtaaacttcaaagaatagacaagtttcttgcaagatgtctacattaccaatatccattactattttcgtatggtga 269  Q
    ||||||||||  | |||||||||||||||||||||||||||||  ||| || || ||||  || ||||||||||||||| ||||||||||| ||||| ||    
T  30962298 atatgattattcagactcaaagtggtaaacttcaaagaatagatgagtgtcatgaaagacatcgacattaccaatatccgttactattttcttatggcga 30962397  T
Q  270 caatggctatagatcacaagtggctca------aaacagatgtggtaaaatcactaaaatgaatcgtattactataagagattgaccggccctcaaaatt 363  Q
      ||||||||||| |  |||| || ||       |||| ||||||||||||| |||||| ||||||||||| |||| ||||  ||||  || ||| |||     
T  30962398 ggatggctatagacctgaagttgcacatagaggcaacaaatgtggtaaaatcgctaaaaagaatcgtattattataggagaaagaccaaccttcagaata 30962497  T
Q  364 atgtctagaaccaatgaggcactttaagatgactta 399  Q
    ||||| ||||||| ||||||||||||  ||||||||    
T  30962498 atgtccagaaccattgaggcactttactatgactta 30962533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 376
Target Start/End: Original strand, 30931969 - 30932169
Alignment:
Q  184 actcaaagtggtaaacttcaaagaatagacaagtttcttgcaagatgtctacattaccaatatccattactattttcgtatggtgacaatggc--tatag 281  Q
    |||||||||||||||| ||||||||||||  ||| |  |||| ||| |||||||||||||||| ||||||||||||| ||||||||  |||||  |||||    
T  30931969 actcaaagtggtaaacatcaaagaatagatgagtgtagtgcatgatatctacattaccaatatacattactattttcttatggtgaggatggctatatag 30932068  T
Q  282 atcacaagtggctc------aaaacagatgtggtaaaatcactaaaatgaatcgtattactataagagattgaccggccctcaaaattatgtctagaacc 375  Q
    | |  | |||||||      | |||  ||||||||||| ||||||||  |||||||||||||||||||| ||| ||||| ||  ||||||||  ||||||    
T  30932069 acctgatgtggctcatagcgataacgaatgtggtaaaaccactaaaagaaatcgtattactataagagaatgatcggccttccgaattatgttcagaacc 30932168  T
Q  376 a 376  Q
    |    
T  30932169 a 30932169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 30956874 - 30956940
Alignment:
Q  170 atatgattatgtaaactcaaagtggtaaacttcaaagaatagacaagtttcttgcaagatgtctaca 236  Q
    |||| |||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  30956874 atataattatgtaaactcaaagtggtaaacttcaatgaacagacgagtttcttgcaagatgtctaca 30956940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 30956786 - 30956836
Alignment:
Q  59 aagaatgaaatacaaaatagaattaaaggttacaagcatatacggtcgaca 109  Q
    |||||||||||||||||||||||  ||||||||||| |||||| |||||||    
T  30956786 aagaatgaaatacaaaatagaatgcaaggttacaagtatatacagtcgaca 30956836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 30956938 - 30956990
Alignment:
Q  285 acaagtggctcaaaacagatgtggtaaaatcactaaaatgaatcgtattactata 339  Q
    |||||||||||||||||  |||| |||||||||||| ||||||| ||||||||||    
T  30956938 acaagtggctcaaaaca--tgtgataaaatcactaatatgaatcatattactata 30956990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 30962164 - 30962236
Alignment:
Q  26 accaaaatttgctcagtttacatttacaataccaagaatgaaatacaaaatagaattaaaggttacaagcata 98  Q
    |||||||||| ||||| |||||||||| ||||  |||||| |||||||||||  ||  ||||||||| |||||    
T  30962164 accaaaatttactcagcttacatttacgatacatagaatgcaatacaaaataatatgcaaggttacatgcata 30962236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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