View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20641_high_9 (Length: 268)
Name: NF20641_high_9
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20641_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 11411899 - 11412049
Alignment:
| Q |
94 |
attctaattgctaaggaacaaattatctattaacgttgtttaagtatgcataatatctaaagtacattaaaagagaaattattccatacgtgtaaattgt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11411899 |
attctaattgctaaggaacaaattatctattaacgttgtttaagtatacatgatatctaaagtacattaaaagagaaattattcgatacgtgtaaattgt |
11411998 |
T |
|
| Q |
194 |
cgatgttgttatcttcctttagccaaaccttcaagaaatctaaagaagaag |
244 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11411999 |
cgatgttgttatcttccttcagccaaaccttcaagaaatctaaagaagaag |
11412049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11409964 - 11410063
Alignment:
| Q |
1 |
agtatttgtaacaatcaatttgatttgaatacctcatac--ctcaaggtttgatgataacataacaaggaaagcaaaggcgtgttgtcacatgatattct |
98 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11409964 |
agtatttgtcacaatcaatttgatttgaatacctcatacacctcaaggtttgatgataacataacaaggaaagcaaaggcgtgttatcacatgatattct |
11410063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University