View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20641_low_11 (Length: 263)

Name: NF20641_low_11
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20641_low_11
NF20641_low_11
[»] chr4 (3 HSPs)
chr4 (1-233)||(49542384-49542615)
chr4 (44-122)||(40918643-40918717)
chr4 (1-45)||(40918558-40918602)
[»] chr8 (4 HSPs)
chr8 (1-45)||(2882954-2882998)
chr8 (1-45)||(2873230-2873274)
chr8 (1-45)||(3151557-3151601)
chr8 (44-95)||(2882883-2882931)
[»] chr1 (1 HSPs)
chr1 (1-45)||(1086644-1086688)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 49542384 - 49542615
Alignment:
Q  1 atgagaacccacgcactttaaacctagtaaaaaccttgcgagaaaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctagctgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49542384 atgagaacccacgcactttaaacctagtaaaaaccttgcgagaaaacattgtcgaggaggagaaaggaaatgagcaatatggaacgaatatctagctgtg 49542483  T
Q  101 agtcttgttcggattcggcggccatggcaagggg----agatgaaattgcagtgaggaccacatgccacattatattatgactggctatttcatgtacaa 196  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||     | ||||||||||||||||||||||||    
T  49542484 agtcttgttcggattcggcggccatggcaagggggagatgatgaaattgcaatgaggaccacatgccac-----actatgactggctatttcatgtacaa 49542578  T
Q  197 tagttaaaattataaatcaccgatttctcctcatgcc 233  Q
    ||||||||||||||||||||| |||||||||||||||    
T  49542579 tagttaaaattataaatcaccaatttctcctcatgcc 49542615  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 40918643 - 40918717
Alignment:
Q  44 aaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggc 122  Q
    ||||||||||||||||   |||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  40918643 aaacattgtcgaggag---aaaggaaaagagcaatatggaacgaatatctagccgtgag-cttgttcggattgggcggc 40918717  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40918558 - 40918602
Alignment:
Q  1 atgagaacccacgcactttaaacctagtaaaaaccttgcgagaaa 45  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  40918558 atgagaacccacgcactttaaacgtagtaaaaaccttgcgagaaa 40918602  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2882998 - 2882954
Alignment:
Q  1 atgagaacccacgcactttaaacctagtaaaaaccttgcgagaaa 45  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  2882998 atgagaacccacgccctttaaacctagtaaaaaccttgcgagaaa 2882954  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2873274 - 2873230
Alignment:
Q  1 atgagaacccacgcactttaaacctagtaaaaaccttgcgagaaa 45  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  2873274 atgagaacccacaccctttaaacctagtaaaaaccttgcgagaaa 2873230  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3151557 - 3151601
Alignment:
Q  1 atgagaacccacgcactttaaacctagtaaaaaccttgcgagaaa 45  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  3151557 atgagaacccacgccctttaaacctaataaaaaccttgcgagaaa 3151601  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 2882931 - 2882883
Alignment:
Q  44 aaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctag 95  Q
    ||||||||||||||||   ||||||||  |||||||||||||||||||||||    
T  2882931 aaacattgtcgaggag---aaaggaaaatagcaatatggaacgaatatctag 2882883  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1086688 - 1086644
Alignment:
Q  1 atgagaacccacgcactttaaacctagtaaaaaccttgcgagaaa 45  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||    
T  1086688 atgagaacccacacacttgaaacctagtaaaaaccttgcgagaaa 1086644  T

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