View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20641_low_12 (Length: 259)
Name: NF20641_low_12
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20641_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 35280094 - 35280325
Alignment:
| Q |
18 |
accaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
35280094 |
accaacaccattgaaaagtgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaa |
35280193 |
T |
|
| Q |
118 |
tcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgat |
217 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35280194 |
tcaagaggagccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgat |
35280293 |
T |
|
| Q |
218 |
ttcggaaaaattgacattctgcttggcctatg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35280294 |
ttcggaaaaattgacattctgcttggcctatg |
35280325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 35289439 - 35289670
Alignment:
| Q |
18 |
accaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaa |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35289439 |
accaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaa |
35289538 |
T |
|
| Q |
118 |
tcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgat |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| |
|
|
| T |
35289539 |
tcaagaggtgccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgag |
35289638 |
T |
|
| Q |
218 |
ttcggaaaaattgacattctgcttggcctatg |
249 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |
|
|
| T |
35289639 |
ttctgaaaaattgacattctgcttgacctatg |
35289670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 35307246 - 35307468
Alignment:
| Q |
27 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
126 |
Q |
| |
|
||||||||| |||||||||||||| | ||| ||||| | |||||||||| |||||||||| || |||||| | ||||| || || |||||| ||| |
|
|
| T |
35307246 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggt |
35307345 |
T |
|
| Q |
127 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
226 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
35307346 |
gctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35307445 |
T |
|
| Q |
227 |
attgacattctgcttggcctatg |
249 |
Q |
| |
|
|||| || ||| ||||||||||| |
|
|
| T |
35307446 |
attggcactctccttggcctatg |
35307468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 35322247 - 35322469
Alignment:
| Q |
27 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
126 |
Q |
| |
|
||||||||| |||||||||||||| | ||| ||||| | |||||||| | |||||||||| ||||||||| | ||||| || || ||||||||| |
|
|
| T |
35322247 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggt |
35322346 |
T |
|
| Q |
127 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
226 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
35322347 |
gctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35322446 |
T |
|
| Q |
227 |
attgacattctgcttggcctatg |
249 |
Q |
| |
|
|||| || ||| ||||||||||| |
|
|
| T |
35322447 |
attggcactctccttggcctatg |
35322469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 35275327 - 35275542
Alignment:
| Q |
18 |
accaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaa |
117 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |||| ||||| |||||||| || ||||| ||||||| |
|
|
| T |
35275327 |
accaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaa |
35275426 |
T |
|
| Q |
118 |
tcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgat |
217 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| ||| || ||| |||||||||||| || |||||| |||| ||||| | |||||||| |||||||| |
|
|
| T |
35275427 |
tcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgat |
35275526 |
T |
|
| Q |
218 |
ttcggaaaaattgaca |
233 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
35275527 |
ttctgaaaaattgaca |
35275542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 35311589 - 35311814
Alignment:
| Q |
27 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
126 |
Q |
| |
|
||||||||| ||||||||||||| | || ||||| | |||||||||| |||| ||||| ||||||||| | ||||| || || |||||| ||| |
|
|
| T |
35311589 |
attgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
35311688 |
T |
|
| Q |
127 |
gccaaatttgtgtcac---caccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcgga |
223 |
Q |
| |
|
|| ||||| |||||| ||| ||||| || |||||| | ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
|
|
| T |
35311689 |
gctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
35311788 |
T |
|
| Q |
224 |
aaaattgacattctgcttggcctatg |
249 |
Q |
| |
|
| ||| |||| ||| ||||||||||| |
|
|
| T |
35311789 |
acaatcgacactctccttggcctatg |
35311814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University