View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20641_low_15 (Length: 228)
Name: NF20641_low_15
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20641_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 13151908 - 13152101
Alignment:
| Q |
20 |
gctagtatataaaaaggtatttttaattcctcttggcacactattattcatcaattcacaactaatctataacttaagttaaaataacttatcgctatgt |
119 |
Q |
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| T |
13151908 |
gctagtatataaaaaggtatttttaattcctcttggcacactattattcatcaattcacaactaatctataacttaagttaaaataaattatcgctatgt |
13152007 |
T |
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| Q |
120 |
tgattgttcannnnnnnaaacactaaaatatcaacaagtaaaatatactcctacgaacatataactaattatatatataaattgcatatctgtg |
213 |
Q |
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| T |
13152008 |
tgattgttcatttttttaaacactaaaatatcaacaagtaaaatatactcctacgaacatataaataattttatatataaattgcatatctgtg |
13152101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 13168015 - 13168208
Alignment:
| Q |
20 |
gctagtatataaaaaggtatttttaattcctcttggcacactattattcatcaattcacaactaatctataacttaagttaaaataacttatcgctatgt |
119 |
Q |
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| T |
13168015 |
gctagtatataaaaaggtacttttaattcctcttgtcacactattattcatcaattcacaactaatctataacttaagttaaaataatttatcgctatgt |
13168114 |
T |
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| Q |
120 |
tgattgttcannnnnnnaaacactaaaatatcaacaagtaaaatatactcctacgaacatataactaattatatatataaattgcatatctgtg |
213 |
Q |
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| T |
13168115 |
tgattgttcatttttttacacactaaaatatcaacaagtaaaatatactcctacgaacatataattaattttatatataaattgcatatctgtg |
13168208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 13180194 - 13180388
Alignment:
| Q |
20 |
gctagtatataaaaaggtatttttaattcctcttggcacactattattcatcaattcacaactaatctataacttaagttaaaataacttatcgctatgt |
119 |
Q |
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| T |
13180194 |
gctagtatataaaaaggtatttttaattcctcttgtcacactattattcatcaattcacaacgattctataacttaagttaaaataacttatcgctatgt |
13180293 |
T |
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| Q |
120 |
tgattgttcannnnnnnaaacactaaaatatcaacaagt-aaaatatactcctacgaacatataactaattatatatataaattgcatatctgtg |
213 |
Q |
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| T |
13180294 |
tgattgttcatttttttaaacactaaaatatcaacaagtaaaaatatagtcctactaacatataattaattttatatataaattgcatatctgtg |
13180388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 13188624 - 13188811
Alignment:
| Q |
22 |
tagtatataaaaaggtatttttaattcctcttggcacactattattcatcaattcacaactaatctataacttaagttaaaataacttatcgctatgttg |
121 |
Q |
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| T |
13188624 |
tagtatataaaaaggtatttctaatttctcttatcacaccattattcatcaattcaaaattaatctttaacttaagttacaaaaacatatggctatgttg |
13188723 |
T |
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| Q |
122 |
attgttcannnnnnnaaacactaaaatatcaacaagtaaaatatactcctacgaacatataactaattatatatataaattgcatatct |
210 |
Q |
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| T |
13188724 |
attcttcatttttt-aaacactaaaatatcaacaagtaaaatacactcctacgaacatgtaaataattgtatatataaattgcatatct |
13188811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 13137065 - 13137174
Alignment:
| Q |
20 |
gctagtatataaaaaggtatttttaattcctcttggcacactattattcatcaattcacaactaatc-tataactta----agttaaaataacttatcgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||| | ||||||| ||||| || || ||||||| |
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| T |
13137065 |
gctagtatataaaaaggtatttttaattcctcttatcacaccattatttatcaattcaaaactaatcttttaacttacttcagttacaaaaatttatcgc |
13137164 |
T |
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| Q |
115 |
tatgttgatt |
124 |
Q |
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|||||||||| |
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| T |
13137165 |
tatgttgatt |
13137174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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