View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20641_low_8 (Length: 287)
Name: NF20641_low_8
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20641_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 34548319 - 34548065
Alignment:
| Q |
16 |
tgtgaagctatacaagaatgaagaaattagcataactgtaactggacacagtttgggtggtgcacttgcaactataagttcagtggatatagttgctaat |
115 |
Q |
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| T |
34548319 |
tgtggagctatacaagaatgaagaaattagcataactgtaactggacacagtttgggtggtgcacttgcaactataagttcagtggatatagttgctaat |
34548220 |
T |
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| Q |
116 |
aaattcaacatgccaaaagggcaacctcaaaaagcatgtccagttacaacatttgcatttggtgcacctcgtgttggaaattcttactttcaaaagattt |
215 |
Q |
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| T |
34548219 |
aaattcaacatgccaaaagagcaacctcaaaaagcatgtccagttacaacatttgcatttggtgcacctcgtgttggaaattcttactttcaaaagattt |
34548120 |
T |
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| Q |
216 |
tctctgaccacaaagatttgagtgcattgtttgttcgaaatgaaaatgatattgt |
270 |
Q |
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| T |
34548119 |
tctctgaccacaaagatttgagtgcattgtttgttcgaaatgaaaatgatattgt |
34548065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 34556812 - 34556573
Alignment:
| Q |
16 |
tgtgaagctatacaagaatgaagaaattagcataactgtaactggacacagtttgggtggtgcacttgcaactataagttcagtggatatagttgctaat |
115 |
Q |
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| T |
34556812 |
tgtggagctatataagaatgaagaaattagcataactgtaacgggacacagcttgggtggtgcacttgcaactataagctctatggatatagttgctaat |
34556713 |
T |
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| Q |
116 |
aaattcaacatgccaaaagggcaacctcaaaaagcatgtccagttacaacatttgcatttggtgcacctcgtgttggaaattcttactttcaaaagattt |
215 |
Q |
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| T |
34556712 |
aaattcaacataccaaaagggcaacctcaaaaaacatgtccagtcacattatttgcatttggttcacctcgtgttggaaattctaactttgaaaagattt |
34556613 |
T |
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| Q |
216 |
tctctgaccacaaagatttgagtgcattgtttgttcgaaa |
255 |
Q |
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| T |
34556612 |
tctccgacaacaatgatttgagagcattgtttattcgaaa |
34556573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 4674924 - 4674847
Alignment:
| Q |
25 |
atacaagaatgaagaaattagcataactgtaactggacacagtttgggtggtgcacttgcaactataagttcagtgga |
102 |
Q |
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| T |
4674924 |
atacaagaatgaagaaataagcataactataacaggtcacagtttaggtgctgcaattgcaactctaaatgcagtgga |
4674847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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