View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20641_low_9 (Length: 276)
Name: NF20641_low_9
Description: NF20641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20641_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 5139740 - 5139508
Alignment:
| Q |
24 |
gtaacggcattgtttttctctttctgttttgagagattttaggttctgtctgtatgtttatgaaaatgacattgtgatttttgcagactcatggagtgcg |
123 |
Q |
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| T |
5139740 |
gtaacggcattgtttttctctttctgttttgagagattttaggctccgtccgtatgtttatgaaaatgacattgtgatttttgcagactcatggagtgcg |
5139641 |
T |
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| Q |
124 |
aattggacaagaaagtgccaagaagacaattggttttattgaggtatcataatataagagtttattgatatacaccgtcggtgtaaaagagttacacatg |
223 |
Q |
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| T |
5139640 |
aattagacaagaaagtgccaagaagacaattggttttattgaggtatcataatataagagtttattgatatacaccgtcggtgtaaaagagttacacatg |
5139541 |
T |
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| Q |
224 |
acttcatatatatattgatgaggcaacacattgatcc |
260 |
Q |
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| T |
5139540 |
actt----gatatattgatgaggcaacacattgatcc |
5139508 |
T |
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