View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20642_high_6 (Length: 326)
Name: NF20642_high_6
Description: NF20642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20642_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 304
Target Start/End: Original strand, 44171250 - 44171553
Alignment:
| Q |
4 |
ggagaagcatagggtgctttataattgcttctacttgctactgtcagcaagagtagaatgccaaaatctgtatatcactaaatgctgtgaaaagtgttca |
103 |
Q |
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| T |
44171250 |
ggagaatcatggggtgctttataattgcttctacttgctactgtcagcaagagtagaatgccaaaatctgtatatcactaaatgctgtgaaaagtgtgca |
44171349 |
T |
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| Q |
104 |
atttcacttcattaattgatcacacaggcaaactgctactatcaccacttc---nnnnnnnnnnnnnncactaaatcacaatcagtatctaggctttcac |
200 |
Q |
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| T |
44171350 |
acttcacttcattaattgatcacacaggcaaactgctactatcaccacttcaaaaaaaaaaaaaaaaacactaaatcacaatcagtatctaggctttcac |
44171449 |
T |
|
| Q |
201 |
aggtttatattatatcgttattaaagctgctctatcaaatttcatgcannnnnnngcatcaatgaccatattgagcctgttaatgagtgtgtaaaactga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44171450 |
aggtttatattatatcgttattaaagctgctctatcaaatttcatgcatttttttgcatcaatgatcatattgagcctgttaatgagtgtgtaaaactga |
44171549 |
T |
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| Q |
301 |
tgat |
304 |
Q |
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|||| |
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| T |
44171550 |
tgat |
44171553 |
T |
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