View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20642_high_9 (Length: 318)
Name: NF20642_high_9
Description: NF20642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20642_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 13861688 - 13861406
Alignment:
| Q |
9 |
gataatactgctttattatctgttgatgactggcaactaaactgtttatgataaatatctctaggaggaccatacacaatgggaggtaaaaagagaactt |
108 |
Q |
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| T |
13861688 |
gataatactgctttttt--ctgttgatgactggtaactaaacagtttatgataaatatatctaggaggaccatacacaatgggaggtaaaaagagaactt |
13861591 |
T |
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| Q |
109 |
atatatgattatatgatatatcaggtgcttgaattgttagagaagtagggggtgtaattcttattcaagtaacgtggctgcccacaagcaatttgtgtgc |
208 |
Q |
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| T |
13861590 |
atatataattatatgatatatcaggtgcttgaattgttagagaagtagggggtgtaattcttattcaagtaacgtggctgcccacaagcaatttgtgtgc |
13861491 |
T |
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| Q |
209 |
atatatgtgtaggcggaggactagggttttgttgtatcatggctcacattcaggtctttttctagtatatgacatatatgttgat |
293 |
Q |
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| T |
13861490 |
atatatgtgtaggcggaagactagggttttgttgcatcgtggctcacattcaggtctttttctagtatatgacatatatgttgat |
13861406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 9439059 - 9438945
Alignment:
| Q |
160 |
gtgtaattcttattcaagtaacgtggctgcccacaagcaa-tttgtgtgcatatatgtgtaggcggaggactagggttttgttgtatcatggctcacatt |
258 |
Q |
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| T |
9439059 |
gtgtaattcctattcaagttatgtggctgctcacaagcaattttttgtgcctacatgtctaggcgaaggcctagcgttttgttgtgtcgtggctcacctt |
9438960 |
T |
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| Q |
259 |
caggtctttttctag |
273 |
Q |
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| T |
9438959 |
caaatatttttctag |
9438945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 20696228 - 20696365
Alignment:
| Q |
138 |
tgaattgttagagaagtagggg-gtgtaattcttattcaagtaac----gtggctgcccacaagcaatttgtgtgcatatatgtgtaggcggaggactag |
232 |
Q |
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|||||| |||||| | |||||| ||||||||||||||||||| | |||||||| ||||||||| | || | || ||||||||||| ||| |||| |
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| T |
20696228 |
tgaattattagaggactaggggtgtgtaattcttattcaagttagttatgtggctgctcacaagcaaat---gttcctacatgtgtaggcgaagggctag |
20696324 |
T |
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| Q |
233 |
ggttttgttgtatcatggctcacattcaggtctttttctag |
273 |
Q |
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| T |
20696325 |
ggttttgttgcgtcatggctcaccttcaaatctttttctag |
20696365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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