View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20643_high_8 (Length: 238)
Name: NF20643_high_8
Description: NF20643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20643_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43025282 - 43025062
Alignment:
| Q |
1 |
ttttaagttgagagaaaatgaattaatcgaatgtaatcggtgtcagatagcgtagtgacactgtcacctttgattagaggtgtctgtcctatagaagttc |
100 |
Q |
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| T |
43025282 |
ttttaagttgagagaacatgaattaatcgaatgtaatcggtgtcagatagcgtagtgacactgtcacctttgattagaggtgtctgtcctatagaagttc |
43025183 |
T |
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| Q |
101 |
tgagtgttctgagtgttcgtctttgcaatatcgtgctcatgcatattatatgtatttcatggttgatatttaattcaacataattaaaattttcaaatca |
200 |
Q |
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| T |
43025182 |
tgagtgttctgagtgttcgtctttgcaatatcgtgctcatgcatattatatgtatttcatggttgatatttagttcaacataattaaaattttcaaatca |
43025083 |
T |
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| Q |
201 |
tacggtgacagaagagagttc |
221 |
Q |
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| T |
43025082 |
tacggtgacagaagagagttc |
43025062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 35063813 - 35063718
Alignment:
| Q |
16 |
aaatgaattaatcgaatgtaatcggtgtcagatagcgtagt-gacactgtcacctttgattagaggtgtctgtcctatagaagttctgagtgttct |
110 |
Q |
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| T |
35063813 |
aaatgaattaaccgaatataatccgtgtcagatagtgtagtagacactgtcacctttgattagaggtgtctgtgctatagatgttctgggtgttct |
35063718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 42814859 - 42814804
Alignment:
| Q |
57 |
gacactgtcacctttgattagagg-tgtctgtcctatagaagttctgagtgttctg |
111 |
Q |
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| T |
42814859 |
gacactggcacctttgattagagggtgtctgtgctatagaagttctgagtgttctg |
42814804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 42814747 - 42814700
Alignment:
| Q |
174 |
ttcaacataattaaaattttcaaatcatacggtgacagaagagagttc |
221 |
Q |
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|||||||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
42814747 |
ttcaacataattaaaattttcaaatcatactgtgatggaagggagttc |
42814700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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