View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20643_low_3 (Length: 309)
Name: NF20643_low_3
Description: NF20643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20643_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 38822784 - 38822502
Alignment:
| Q |
18 |
ggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatg |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822784 |
ggaaaatgttcttgaggaaaattgagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatg |
38822685 |
T |
|
| Q |
118 |
taccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcctctatacttaatttgctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822684 |
taccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcctctatacttaatttgctt |
38822585 |
T |
|
| Q |
218 |
tggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgttaacataataacttagccttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822584 |
tggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgttaacataataacttagccttt |
38822502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 38809831 - 38809626
Alignment:
| Q |
22 |
aatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtacc |
121 |
Q |
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||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38809831 |
aatgttcatgaggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaatgtacc |
38809732 |
T |
|
| Q |
122 |
aagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcctctatacttaatttgctttggt |
221 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
38809731 |
aagccaaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatggccttatccttactcctctatactttattttctttggt |
38809632 |
T |
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| Q |
222 |
aattca |
227 |
Q |
| |
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|||||| |
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| T |
38809631 |
aattca |
38809626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 38811909 - 38811639
Alignment:
| Q |
17 |
aggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagc-----tcttgcagcttcctcagcagtgt |
111 |
Q |
| |
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|||||||||||| || ||||| || ||||| || ||||||||||||| ||||||||||| |||||||||| | |||||||||||| | ||| | |
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| T |
38811909 |
aggaaaatgttcatgtggaaagttgagaatggccaaagaacctctcatttcaaaagcagcatgatcataagcccttgttttgcagcttccttactagtat |
38811810 |
T |
|
| Q |
112 |
taaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatc-tctgcagcaaattttccccatggccttatcctcactcctctatacttaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||||| |||||||| ||||| ||||||||||||| | |
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| T |
38811809 |
taaatgtaccaagccaaactcgagcaccatgcctagccgaatctctaatcttaggggggaaattttggccatggccggatcctttctcctctatacttga |
38811710 |
T |
|
| Q |
211 |
tttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgtta |
281 |
Q |
| |
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||||| ||| |||||| |||| |||||||| || | || ||||||||||||||||||||||||||| |
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| T |
38811709 |
tttgcattgttaattcctcttcattcacctttccctctacgtcgttttccattgtgtgtacaagaatgtta |
38811639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 32986435 - 32986282
Alignment:
| Q |
33 |
ggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactc |
132 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||| || || |||||||| | | |
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| T |
32986435 |
ggaaaattaagaattgcaaatgaacctctcatattaaaagcagctctatcataagctcttgcagcttcttcagcagtgttgaaagtgccaagccatatcc |
32986336 |
T |
|
| Q |
133 |
gagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggcc |
186 |
Q |
| |
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||| |||||| ||||| |||||||| || ||||||||||||||||||| |
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| T |
32986335 |
tctgaccttgcctattggaatcacgaatctcggccgcaaattttccccatggcc |
32986282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 30736443 - 30736571
Alignment:
| Q |
56 |
acctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatct |
155 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||| || ||||| || || ||||| | ||||| | || |
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| T |
30736443 |
acctctcatctcaaaagcagcacgatcataagctcttgcagcttcctccgcggtgagaaatgtgcctagccacacgcgtgcaccgcgtctagctgggtcc |
30736542 |
T |
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| Q |
156 |
cgaatctctgcagcaaattttccccatgg |
184 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |
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| T |
30736543 |
cgaatctcagccgcaaactttccccatgg |
30736571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 39360444 - 39360398
Alignment:
| Q |
84 |
taagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaac |
130 |
Q |
| |
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|||||||| |||||||| ||||||||||| ||||||||||||||||| |
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| T |
39360444 |
taagctctagcagcttcttcagcagtgttgaatgtaccaagccaaac |
39360398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 40444680 - 40444726
Alignment:
| Q |
156 |
cgaatctctgcagcaaattttccccatggccttatcctcactcctct |
202 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
40444680 |
cgaatttctgcagcatattttccccatggccttctccttactcctct |
40444726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 32993141 - 32993084
Alignment:
| Q |
55 |
aacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt |
112 |
Q |
| |
|
|||| ||||||| ||||||| | | |||||||||||| || ||||||||||||||||| |
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| T |
32993141 |
aacccctcatattaaaagcatctctatcataagctctagctgcttcctcagcagtgtt |
32993084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 32998498 - 32998441
Alignment:
| Q |
55 |
aacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt |
112 |
Q |
| |
|
|||| ||||||| ||||||| | | |||||||||||| || ||||||||||||||||| |
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|
| T |
32998498 |
aacccctcatattaaaagcatctctatcataagctctagctgcttcctcagcagtgtt |
32998441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 33003147 - 33003083
Alignment:
| Q |
48 |
gcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt |
112 |
Q |
| |
|
||||| ||||| ||||||| | ||||||| | |||||||||||| || ||||| ||||||||||| |
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| T |
33003147 |
gcagatgaaccactcatattataagcagctctatcataagctctagccgcttcatcagcagtgtt |
33003083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 35548081 - 35547999
Alignment:
| Q |
18 |
ggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttc |
100 |
Q |
| |
|
||||||||||| || |||||| | |||||||| ||||||||||| ||||| |||||||| | |||||||||||||||||||| |
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| T |
35548081 |
ggaaaatgttcatgtggaaaaattagaatagctgaagaacctctaatatcgaaagcagcacagtcataagctcttgcagcttc |
35547999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 1008600 - 1008553
Alignment:
| Q |
159 |
atctctgcagcaaattttccccatggccttatcctcactcctctatac |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| ||||||||| |
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|
| T |
1008600 |
atctctgcagcaaatttcccccatggccttcgcctcacacctctatac |
1008553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 8111468 - 8111500
Alignment:
| Q |
80 |
atcataagctcttgcagcttcctcagcagtgtt |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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| T |
8111468 |
atcataagctcttgcagcttcttcagcagtgtt |
8111500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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