View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20643_low_4 (Length: 287)
Name: NF20643_low_4
Description: NF20643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20643_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 1141148 - 1141425
Alignment:
| Q |
1 |
tggtcaagaggtggagcccatccagcaaagtttagtagcaaagatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141148 |
tggtcaagaggtggagcccatccagcaaagtttagtagcaaagatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatg |
1141247 |
T |
|
| Q |
101 |
gaaagacaaccaatgtttgtcatttgtttgcaaggaaattcggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattg |
200 |
Q |
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| T |
1141248 |
gaaagacaaccaatgtttgtcatttgtttgcaaggaaattcggtactcaagctttggatggactgctcacatttgcaccaaagttaatgcaattcaattg |
1141347 |
T |
|
| Q |
201 |
attttgcatatatttacnnnnnnnncattgatcatattcaatgatttatgtaatgaattcagggatacctagaattat |
278 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1141348 |
attttgcatatatttacttttttttcattgatcatattcaattatttatgtaatgaattcagggatacctagaattat |
1141425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 1137687 - 1137966
Alignment:
| Q |
1 |
tggtcaagaggtggagcccatccagcaaagtttagtagcaaagatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatg |
100 |
Q |
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| T |
1137687 |
tggtcaaaaggtggagcccatccagcaaagtttagtagcaaagatgtgactattgattttttggagagattaagatttggaagcacttgtgagtacaatg |
1137786 |
T |
|
| Q |
101 |
gaaagacaaccaatgtttgtcatttgtttgcaaggaaattcggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattg |
200 |
Q |
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| T |
1137787 |
gaaaaacaaccaatgtttgtcatttgtttgcaaggaaattcggaactcaagctttggatggattgctcacatttgccccaaagttaatgcaattcaattg |
1137886 |
T |
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| Q |
201 |
attttgcatatatttac----nnnnnnnncattgatcatattcaatgatttatgtaatgaattcagggatacctagaatt |
276 |
Q |
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|||||||||| || ||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1137887 |
attttgcatagatgtactttttttttcttcattgatcacattcaatgattcatgtaatgaattcagggatacctagaatt |
1137966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 31266472 - 31266268
Alignment:
| Q |
1 |
tggtcaagaggtggagcccatccagcaaagtttagtagcaaagatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatg |
100 |
Q |
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||||||| ||||||| | |||||| | |||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31266472 |
tggtcaaaaggtggaccacatccatctaagttttttagacaacatttgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatg |
31266373 |
T |
|
| Q |
101 |
gaaagacaaccaatgtttgtcatttgtttgcaaggaaattcggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattg |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| | |||| ||||||||| || |||| | ||||| |||||||| |||||||||||||| |
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| T |
31266372 |
gaaagacaatcaatgtttgtcatttgtttgcaaggaaattcactcctcatgctttggatagattgcttagatttgctccaaagttgatgcaattcaattg |
31266273 |
T |
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| Q |
201 |
atttt |
205 |
Q |
| |
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||||| |
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| T |
31266272 |
atttt |
31266268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 54474403 - 54474217
Alignment:
| Q |
19 |
catccagcaaagtttagtagcaaagatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgttt |
118 |
Q |
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|||||| |||| |||| | ||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
54474403 |
catccatcaaaatttaatggcaaagatgtgactaaagattttttggagaggttaaggtttggtagcagttgtgagtacaatggaaggacaaccaatgttt |
54474304 |
T |
|
| Q |
119 |
gtcatttgtttgcaaggaaattcggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattgatttt |
205 |
Q |
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| ||||||||||||||||||||| || || | ||||||||| | |||||| ||||| | | |||||||||||||||||||||| |
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| T |
54474303 |
gccatttgtttgcaaggaaattcagtcctgatgctttggatagtttgctcagatttgctaaagatttaatgcaattcaattgatttt |
54474217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 48323288 - 48323126
Alignment:
| Q |
40 |
aaagatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgtttgtcatttgtttgcaaggaaat |
139 |
Q |
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||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||||| | |
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| T |
48323288 |
aaagatgtgactactgaatttttggagaggttgaggtttggaagcacttgtgagcacaatggaaggacatcca---tttgtcatttgtttgcaaggaagt |
48323192 |
T |
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| Q |
140 |
tcggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattgatttt |
205 |
Q |
| |
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|| | |||| ||||||||| | || | | | ||| |||||||||||||||||||||||||||| |
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| T |
48323191 |
tcactcctcatgctttggatatattggttagatatgctccaaagttaatgcaattcaattgatttt |
48323126 |
T |
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