View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20643_low_5 (Length: 269)
Name: NF20643_low_5
Description: NF20643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20643_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 8338631 - 8338380
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338631 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
8338532 |
T |
|
| Q |
101 |
gaccccagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338531 |
gaccccagacgggaaagcaagagaattgtttttctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
8338432 |
T |
|
| Q |
201 |
aaattgagatcaactgaattgaggtgaagcaggtcaattataacagaagata |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8338431 |
aaattgagatcaactgaattgaggtgaagcaggtcaattataacaaaagata |
8338380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 36100747 - 36100503
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||| | | |||| |
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| T |
36100747 |
tttttgcatcaatgatattatcaatagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccaccagcacctagagaaaaaca |
36100648 |
T |
|
| Q |
101 |
gaccccagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
200 |
Q |
| |
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||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||| |
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|
| T |
36100647 |
gaccccagatgggaaagcaagagaattatttttctttgaaatggtataataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgt |
36100548 |
T |
|
| Q |
201 |
aaattgagatcaactgaattgaggtgaagcaggtcaattataaca |
245 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36100547 |
aaattgacttcaactgaattgaggtgaagcaagtcaattataaca |
36100503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 21482738 - 21482494
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||| || | | | |||| |
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|
| T |
21482738 |
tttttgcgtcaataatattatcaacagaaagaccaaattttctcatcatatttccatatccaccaccagaaaaatgaccaccagctccgacagaaaaaca |
21482639 |
T |
|
| Q |
101 |
gaccccagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
200 |
Q |
| |
|
|| || || |||||||||||||| |||| ||||||||||||||| ||| || | ||||||||| |||||||||||||| ||||| |||||| |
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|
| T |
21482638 |
aacgccggatgggaaagcaagagagttatttttctttccaatggtataataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgt |
21482539 |
T |
|
| Q |
201 |
aaattgagatcaactgaattgaggtgaagcaggtcaattataaca |
245 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
21482538 |
aaattgacatcaactgaattgagatgaagcaagtcaattataaca |
21482494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34971639 - 34971875
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |||| |
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|
| T |
34971639 |
tttttgcgtcaatgatattatcaatagaaagaccaaattttctcatcaaatttccataaccaccaccagaaaaatgaccaccagcacctacagtaaaaca |
34971738 |
T |
|
| Q |
101 |
gaccccagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
200 |
Q |
| |
|
|||||| || || ||||||| |||| ||| |||| ||||||||||||||||| | ||||||||| ||||||||||||| ||| |||||| |
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|
| T |
34971739 |
gaccccggatggaaaagcaaaagaattgtttttatttccaattgtataataaatcttaccaagtgttgcacctgattcaacccatgttgttgattcttgt |
34971838 |
T |
|
| Q |
201 |
aaattgagatcaactgaattgaggtgaagcaggtcaa |
237 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
34971839 |
aaattgacatcaactgaattgaggtgaaacatgtcaa |
34971875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36108006 - 36107764
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||| ||| |||| |
|
|
| T |
36108006 |
tttttgcatcaataatattatcaacagaaagaccaaattttctcatcaaattaccatacccaccaccagagaaatgaccaccagcacctagagtaaaaca |
36107907 |
T |
|
| Q |
101 |
gaccccagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
200 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| |||||||||||||||| | ||||||||| |||||||||||||| ||| |||||| |
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|
| T |
36107906 |
gaccccagatgggaaagcaagcttgttgcttttatttgcaatgttataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgt |
36107807 |
T |
|
| Q |
201 |
aaattgagatcaactgaattgaggtgaagcaggtcaattataa |
243 |
Q |
| |
|
||||||| ||||||||||||||| |||| || ||||| ||||| |
|
|
| T |
36107806 |
aaattgatatcaactgaattgagatgaaacatgtcaagtataa |
36107764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 36090329 - 36090573
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||| |||||||| || ||||||| |||| ||| || || || |||||||| |||| | | |||| |
|
|
| T |
36090329 |
tttttgcatcaatggtattatcaatagaaagaccaaattttctcattaagtttccatgcccagcactagataattggccaccagcccctaccgaaaaaca |
36090428 |
T |
|
| Q |
101 |
gaccccagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
200 |
Q |
| |
|
|||||||| ||||||||||| || | ||||||| ||||||||||||||||| | | ||||||| |||||||||||||||||||| |||| | |
|
|
| T |
36090429 |
taccccagatgggaaagcaagggagttatttttcattgcaatcgtataataaatcttaccaagtattgcacctgattcaacccatgcagtttcttcttct |
36090528 |
T |
|
| Q |
201 |
aaattgagatcaactgaattgaggtgaagcaggtcaattataaca |
245 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
36090529 |
aaattgacatcaattgaattgagatgaagcaagtcaattataaca |
36090573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 36080142 - 36080035
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| |||||||| ||||| ||||| |||||||| |||||||||||||||| | ||| ||||| ||| |
|
|
| T |
36080142 |
tttttgcgtcaattatattatcaacagatagaccaaattttctcattaaattaccataaccaccacctgaaaaatgaccaccagtagctactgtaggaca |
36080043 |
T |
|
| Q |
101 |
gaccccag |
108 |
Q |
| |
|
||||||| |
|
|
| T |
36080042 |
caccccag |
36080035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6838767 - 6838523
Alignment:
| Q |
1 |
tttttgcgtcaatgatattatcaacagaaagaccaaactttctcatcaaatttccatacccaccacccgaaaaatgaccaccagcacctagtgtagaaca |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| | || |
|
|
| T |
6838767 |
tttttgcgtcaataatattatcaatagaaagaccaaattttctcatcaaatttccatacccaccaccagagaaatgaccaccagcacctacagtaaagca |
6838668 |
T |
|
| Q |
101 |
gaccccagacgggaaagcaagagaannnnnnnnctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgt |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
6838667 |
caccccagatgggaaagcaagcttgttgcttttctttgcaatggtataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgt |
6838568 |
T |
|
| Q |
201 |
aaattgagatcaactgaattgaggtgaagcaggtcaattataaca |
245 |
Q |
| |
|
||||||| |||||| |||||||| |||| || ||||| ||||||| |
|
|
| T |
6838567 |
aaattgacatcaacagaattgagatgaaacatgtcaagtataaca |
6838523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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