View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20643_low_6 (Length: 264)
Name: NF20643_low_6
Description: NF20643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20643_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 8060404 - 8060163
Alignment:
| Q |
19 |
ttaccaacttttttatacatctttttcctcctcaagaatctatctaaatcatcaattatagctttctttaaatcaggatccaaagcaattgaatcaaatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060404 |
ttaccaacttttttatacatctttttcctcctcaagaatctatctaaatcatcaattatagctttctttaaatcaggatccaaagcaattgaatcaaatg |
8060305 |
T |
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| Q |
119 |
aagctcgatgattaaaactactttgcagacaagcaccttgcattgaatggatcttgagagttctattatctgcttgcatagcttcataagtgcctaaaac |
218 |
Q |
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||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
8060304 |
aagctggatgattaaaactactttgtagccaagcaccttgcaatgaatggatcttgagagttctattatctgcttgcatagcttcataagggcttaaaac |
8060205 |
T |
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| Q |
219 |
atgtggaatatacttctccattactttatccctatgcttctc |
260 |
Q |
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| T |
8060204 |
atgtggaatatacttctccattactttatctctatgcttctc |
8060163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 8052214 - 8051970
Alignment:
| Q |
19 |
ttaccaacttttttatacatctttttcctcctcaagaatctatctaaatcatcaattatagctttctttaaatcaggatccaaagcaattgaatcaaatg |
118 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| || |||| ||||||||||| ||||| ||||||||||| |
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| T |
8052214 |
ttaccaacttttttatacaactttttcctcctcaaaaatcgatctaaatcatcaattatagaattttttagatcaggatccatagcaagtgaatcaaatg |
8052115 |
T |
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| Q |
119 |
aagctcgatgattaaaactactttgcagacaag---caccttgcattgaatggatcttgagagttctattatctgcttgcatagcttcataagtgcctaa |
215 |
Q |
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| T |
8052114 |
aagcaggatgtgttaaatcactttgtttccatggtccagattgcattgaatgaatcttaagagttttatttcctgcttttatagcttcataagtgcttaa |
8052015 |
T |
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| Q |
216 |
aacatgtggaatatacttctccattactttatccctatgcttctc |
260 |
Q |
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| T |
8052014 |
aacatgtggaatatacttttccattactttatctctatgcttctc |
8051970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 32360293 - 32360366
Alignment:
| Q |
43 |
ttcctcctcaagaatctatctaaatcatcaattatagctttctttaaatcaggatccaaagcaattgaatcaaa |
116 |
Q |
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||||||||||| ||| ||||||||||||||||||| ||||||||| || | | |||||||||| ||| ||||| |
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| T |
32360293 |
ttcctcctcaaaaattgatctaaatcatcaattataactttctttagatgacgttccaaagcaagtgagtcaaa |
32360366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 47547333 - 47547571
Alignment:
| Q |
22 |
ccaacttttttatacatctttttcctcctcaagaatctatctaaatcatcaattatagctttctttaaatcaggatccaaagcaattgaatcaaatgaag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47547333 |
ccaacttttttatacatctttttcctcctcaagaatctatctaaatcatcaattatagctttctttaaatcaggatccaaagcaattgaatcaaatgaag |
47547432 |
T |
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| Q |
122 |
ctcgatgattaaaactactttgcagacaagcaccttgcattgaatggatcttgagagttctattatctgcttgcatagcttcataagtgcctaaaacatg |
221 |
Q |
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|| ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47547433 |
ctggatgattaaaactactttgaagccaagcaccttgcaatgaatggatcttgagagttctattatctgcttgcatagcttcataagtgcttaaaacatg |
47547532 |
T |
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| Q |
222 |
tggaatatacttctccattactttatccctatgcttctc |
260 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |
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| T |
47547533 |
tggaatatacttctccatcactttatatctatgcttctc |
47547571 |
T |
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