View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20644_high_7 (Length: 245)
Name: NF20644_high_7
Description: NF20644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20644_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 11179004 - 11178779
Alignment:
| Q |
18 |
gaaacaagccatttccaacttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttgggtccaaatcggttaggttcgtaccaggtccacc |
117 |
Q |
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| T |
11179004 |
gaaacaagccatttccaacttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttgggtccaaatcggttaggttcgtaccaggtccacc |
11178905 |
T |
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| Q |
118 |
attgggacatattgcttgcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtataatcgatcaacgaaaaat |
217 |
Q |
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| T |
11178904 |
attgggacatattgcttgcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtataatcgatcaacgaaaaat |
11178805 |
T |
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| Q |
218 |
ctgcattgacctcttccgattgtatg |
243 |
Q |
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| T |
11178804 |
ctgcattgacctcttccaattgtatg |
11178779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 11172861 - 11172677
Alignment:
| Q |
59 |
gagtcaaatgtatcaggtgtcgttgggtccaaatcggttaggttcgtaccaggtccaccattgggacatattgcttgcaatgtttgcaagtaagttgtgt |
158 |
Q |
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| T |
11172861 |
gagtcgaatgtatctggagtggctgggtccagatcggttagggtgctaccaggtccaccattgggacatatagttctcaatgtttgtaagtaggttgtgt |
11172762 |
T |
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| Q |
159 |
taagggttgaatcgggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccgattgtatg |
243 |
Q |
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| T |
11172761 |
tgagagttggatcgggatttccagtattgctgaaattgtataatcgatcaacgaagaatctgcattgacctctaccgattgtatg |
11172677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 11156646 - 11156471
Alignment:
| Q |
35 |
acttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttgggtccaaatcggttaggttcgtaccaggtccaccattgggacatattgctt |
134 |
Q |
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| T |
11156646 |
acttgaagattggagtaatagttcttgtcaaatttatcaggagtcgttggatcgaaattggtaaggttcgtgccaggtccaccattgggacatattgtgc |
11156547 |
T |
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| Q |
135 |
gcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtataatcgatcaac |
210 |
Q |
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| T |
11156546 |
gcaattgttgtaagtaagttgtgttaagagttggatccggacttccagtactgctgaagttgtacaatcgaccaac |
11156471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 11149978 - 11149833
Alignment:
| Q |
35 |
acttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttgggtccaaatcggttaggttcgtaccaggtccaccattgggacatattgctt |
134 |
Q |
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| T |
11149978 |
acttgaagattagagtaatagttcttgtcaaatttatcaggagtcgttggatcgaaattggtaaggttcgtgccaggtccaccattgggacatattgtgc |
11149879 |
T |
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| Q |
135 |
gcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttcc |
180 |
Q |
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| T |
11149878 |
gcaattgttgtaagtaagttgtgttaagagttggatccggacttcc |
11149833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 11183723 - 11183852
Alignment:
| Q |
114 |
caccattgggacatattgcttgcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtataatcgatcaacgaa |
213 |
Q |
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| T |
11183723 |
caccattgggacatcttgttctcaatgtttgtaagtaggttgtgttgagagttgggtcaggatttttagtattgttcaaatcgtataatcgatcaacgaa |
11183822 |
T |
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| Q |
214 |
aaatctgcattgacctcttccgattgtatg |
243 |
Q |
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| T |
11183823 |
gaatccacattgacctctaccaattgtatg |
11183852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 11190881 - 11190935
Alignment:
| Q |
18 |
gaaacaagccatttccaacttggagattggagtagtagttggagtcaaatgtatc |
72 |
Q |
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| T |
11190881 |
gaaacaaaccatttccagcttgaagattggagtagtagtttgagtcgaatgtatc |
11190935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 11097774 - 11097703
Alignment:
| Q |
135 |
gcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtataatcgat |
206 |
Q |
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| T |
11097774 |
gcaatgtttgtaagtaagttgtgtttagagtttgatcaggatttccagtgctattgaaattgtataaacgat |
11097703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 11104791 - 11104726
Alignment:
| Q |
135 |
gcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtata |
200 |
Q |
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| T |
11104791 |
gcaatgtttgtaagtaagttgtgtttaatgttggatcaggatttccagtgccactgaaattgtata |
11104726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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