View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20644_low_1 (Length: 536)
Name: NF20644_low_1
Description: NF20644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20644_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 499; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 47198321 - 47197791
Alignment:
| Q |
1 |
ctgtgatcactgatgagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198321 |
ctgtgatcactgatgagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattg |
47198222 |
T |
|
| Q |
101 |
ctggaagacctgtacataattaaacataataaaaattcatgtatttggtttaatattttaacattgattcggctgcattatgcattaaaatgattcatta |
200 |
Q |
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| T |
47198221 |
ctggaagacctgtacataattaaacataataaaaatttatgtatttggtttaatattttaacattgattcgactgcattatgcattaaaatgattcatga |
47198122 |
T |
|
| Q |
201 |
ttaataattaatgctattataattattgagtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaaggg |
300 |
Q |
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| T |
47198121 |
ttaataattaatgctattatagttattgagtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaaggg |
47198022 |
T |
|
| Q |
301 |
actcttaacctcattagccactttactagctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
47198021 |
actcttaacctcattagccactttactagctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttgtaagaacggctttccct |
47197922 |
T |
|
| Q |
401 |
ttctcctcgaaacccctttcaatgagactgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatg |
500 |
Q |
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| T |
47197921 |
ttctcctcgaaacccctttcaatgagactgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatg |
47197822 |
T |
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| Q |
501 |
ataatctccacccatatccacctttgcttct |
531 |
Q |
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| T |
47197821 |
atactctccacccatatccacctttgattct |
47197791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 229 - 524
Target Start/End: Complemental strand, 47185211 - 47184916
Alignment:
| Q |
229 |
agtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagccactttacta |
328 |
Q |
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|||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
47185211 |
agtagttacctgcatacatatggcaattatcaaaggagggagattgtgggacttaacaagatccttgaaggggctcttgacctcattagccactttacta |
47185112 |
T |
|
| Q |
329 |
gctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagac |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185111 |
gctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagac |
47185012 |
T |
|
| Q |
429 |
tgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgataatctccacccatatccacctt |
524 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
47185011 |
tgttgggagtatcatccactatgagagaccccactgtaagcataactgctggaatgattgctccggccaatgatattctccacccatatccacctt |
47184916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 47185782 - 47185672
Alignment:
| Q |
1 |
ctgtgatcactgatgagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47185782 |
ctgtgatcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattg |
47185683 |
T |
|
| Q |
101 |
ctggaagacct |
111 |
Q |
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|||||||||| |
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| T |
47185682 |
ttggaagacct |
47185672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 47212396 - 47212308
Alignment:
| Q |
15 |
gagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattgctg |
103 |
Q |
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|||||||||| ||||||||| | |||||| | ||| |||||| ||||||||||||||||| || ||||||||||| ||| ||||||| |
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| T |
47212396 |
gagtaaagtgcagcatcattcttaaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattgctg |
47212308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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