View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20644_low_2 (Length: 323)
Name: NF20644_low_2
Description: NF20644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20644_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21251115 - 21250894
Alignment:
| Q |
1 |
aacataaaagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatcaataccaaagcttctatttttcatacattgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21251115 |
aacataaaagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatcaataccaaaacttctatttttcatacattgaa |
21251016 |
T |
|
| Q |
101 |
ctagtgagtacatctaacacatagttattgaatatgatggtattacatggtgatttagtaggaggtggtccatccatg-agggaaaacaaaacaagggaa |
199 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||||||| |||||||||||| || |||||||| ||| | || ||||||||||||||||| || |
|
|
| T |
21251015 |
atagtgagtacatccaacatatggttattgaatatgatggtattgcatggtgatttaataagaggtggttcattcgtgcggggaaaacaaaacaaggaaa |
21250916 |
T |
|
| Q |
200 |
gaggttggtagatgatgagaat |
221 |
Q |
| |
|
||||| ||||| |||||||||| |
|
|
| T |
21250915 |
gaggtaggtaggtgatgagaat |
21250894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 21252037 - 21251815
Alignment:
| Q |
1 |
aacataaaagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatcaataccaaagcttctatttttcatacattgaa |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||| || | |||||||| | |||||||||| |||||||||| || |||||| |
|
|
| T |
21252037 |
aacacaaaagattgaaaatttgcattttatcttgaaactgcatttttctaatggtcaaaattactaacaataccaaaatgtctatttttcgtatattgaa |
21251938 |
T |
|
| Q |
101 |
ctagtgagtacatctaacacatagttattgaatatgatggtattacatggtgatttagtaggaggtggtccatccatgagggaaaacaaaacaagggaag |
200 |
Q |
| |
|
||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||||| ||| || |||||||||||||||||||| ||| |
|
|
| T |
21251937 |
ctaatgagtacatccaacacatgattattgaatatgatggtattgcatggtgatttaataggaggtgatccgtctgtgagggaaaacaaaacaaggaaag |
21251838 |
T |
|
| Q |
201 |
aggttggtagatgatgagaatcc |
223 |
Q |
| |
|
|||| ||||| ||||| |||||| |
|
|
| T |
21251837 |
aggtaggtaggtgatgtgaatcc |
21251815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 21250256 - 21250188
Alignment:
| Q |
8 |
aagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatcaataccaa |
76 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
21250256 |
aagattgaagatttgcaatttatcttgaaattgtatttttctgatggataaaattacaaacaataccaa |
21250188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 21251770 - 21251718
Alignment:
| Q |
269 |
gcttacaataacctgtatattatggaccaaaataatactaataggatagagac |
321 |
Q |
| |
|
||||||||||| |||||||||| ||| | ||||||||||||||||||| |||| |
|
|
| T |
21251770 |
gcttacaataagctgtatattagggatcgaaataatactaataggataaagac |
21251718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 27726322 - 27726398
Alignment:
| Q |
6 |
aaaagattgaagatttgcattttatcttgaaactgcatttttctgattgataaaattacaatcaataccaaagcttc |
82 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||| |
|
|
| T |
27726322 |
aaaagattgaaaatttgcattttatcttgaaactgcatttttctgatggataaagttacaaagaataccaaaacttc |
27726398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 27738292 - 27738364
Alignment:
| Q |
6 |
aaaagattgaagatttgcattttatcttgaaactgca-tttttctgattgataaaattacaatcaataccaaa |
77 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| ||||| | || ||||||||||||| |||||||||| |
|
|
| T |
27738292 |
aaaagattgaaaatttgcattttatcttcaaactgcatttttttttatggataaaattacaaacaataccaaa |
27738364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 3072518 - 3072551
Alignment:
| Q |
25 |
ttttatcttgaaactgcatttttctgattgataa |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3072518 |
ttttatcttgaaactgcatttttctgattgataa |
3072551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University