View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20644_low_3 (Length: 311)
Name: NF20644_low_3
Description: NF20644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20644_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 11178701 - 11178405
Alignment:
| Q |
1 |
attttaaagaaacaaaaaatttatacctgagagtgcaactagatcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaa |
100 |
Q |
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| T |
11178701 |
attttgaagaaacaaaaaaattatacctgagagtgcaactagatcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaa |
11178602 |
T |
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| Q |
101 |
gtgggggcaggaagattttgagctgcaagggaattatttgctgttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaatt |
200 |
Q |
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| T |
11178601 |
gtgggggcaggaagattttgagctgcaagggaattatttgctgttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaatt |
11178502 |
T |
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| Q |
201 |
tttgttgcattgtaggataataaagaaaatatatagcatggtttatgatgttaattaataaaattgaaattctat---gaacgtacactgtcacata |
294 |
Q |
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| T |
11178501 |
tttgttgcattgtaggataataaagaaaatatatatcatggtttatgatgttaattaataaaattgaaattctatgaagaacgtacattgtcacata |
11178405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 11172528 - 11172352
Alignment:
| Q |
22 |
tatacctgagagtgcaactagatcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaagtgggggcaggaagattttga |
121 |
Q |
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| T |
11172528 |
tatacctgaaagtgcaactagatctgtagcgtcgagaccttgattatcaaagttagatttcagttgagtaaggttgaaagctggacttggaagatttata |
11172429 |
T |
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| Q |
122 |
gctgcaagggaattatttgctgttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaa |
198 |
Q |
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| T |
11172428 |
ttagcaagggttagatttgctgttaaactatctcttcttcctaatggcactttccaatcaggaccattagcctgcaa |
11172352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 11110534 - 11110473
Alignment:
| Q |
110 |
ggaagattttgagctgcaagggaattatttgctgttaaactatcccttcttcctaatggaac |
171 |
Q |
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| T |
11110534 |
ggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaac |
11110473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 11097426 - 11097386
Alignment:
| Q |
137 |
tttgctgttaaactatcccttcttcctaatggaacttgcca |
177 |
Q |
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| T |
11097426 |
tttgctgttaaactatcccttcttcccaatggaatttgcca |
11097386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 11118469 - 11118423
Alignment:
| Q |
125 |
gcaagggaattatttgctgttaaactatcccttcttcctaatggaac |
171 |
Q |
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| T |
11118469 |
gcaagggattgatttgctgttagactatcccttcttcccaatggaac |
11118423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 11137279 - 11137227
Alignment:
| Q |
143 |
gttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctg |
195 |
Q |
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| T |
11137279 |
gttaaaccatcccttcttcctaagggaaccttccaattaggaccatctgcctg |
11137227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 11184243 - 11184295
Alignment:
| Q |
146 |
aaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaa |
198 |
Q |
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| T |
11184243 |
aaactatctcttcttcctaatggaacttcccaatcaggaccatgagcctgcaa |
11184295 |
T |
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