View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20645_high_14 (Length: 334)
Name: NF20645_high_14
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 33400033 - 33400310
Alignment:
| Q |
23 |
agtcatacatattgtaggatcaaaaaggcaaacaaaaatgtcttatgatgatgaatgcaaaggtaaggttttataattaatatgtttacatgcatatata |
122 |
Q |
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| T |
33400033 |
agtcatacatattgaaggatcaaaaaggcaaacaaaaatgtcttatgatgatgaatgcaaaggtaaggtgttata-----tatgtttacatgcatatata |
33400127 |
T |
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| Q |
123 |
tgaataa-taaattaaatggtttgtgaaaattttaattataatttgatggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggcca |
221 |
Q |
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| T |
33400128 |
taaataaataaattaaatggttagtgaaa-ttttaattataatttgatggttgaatt--aatcaatat----tgtgttctcaggtaagagctcatggcca |
33400220 |
T |
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| Q |
222 |
gagttggttggagtggaaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatct |
311 |
Q |
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| T |
33400221 |
gaattggttggagtggaaggaaaggtagcagaagctacaattgagagggagaatccattggtgaatgccatcattgtgccagaaggatct |
33400310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 33381772 - 33382050
Alignment:
| Q |
23 |
agtcatacatattgtaggatcaaaaaggcaaacaaaaatgtcttatgatgatgaatgcaaaggtaaggttttataattaatatgtttacatgcatatata |
122 |
Q |
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| T |
33381772 |
agtcatacatattcaaggatcaaaaaggaaaa-aaaaatgtct---gatgatgaatgcaaaggtaaggagttatat---atatgtttacatgcttatata |
33381864 |
T |
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| Q |
123 |
tgaataataaattaaatggtttgtgaaaattttaattataatttgatggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggccag |
222 |
Q |
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| T |
33381865 |
tgaataataaattaaatggtttgtgaaa-ttttaattataatttgatggtttaatg--aatcaatatattgtgtgtgctcaggtaagagttcatggccag |
33381961 |
T |
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| Q |
223 |
agttggttggagtggaaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatct |
311 |
Q |
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| T |
33381962 |
aattggttggagttgaaggaaaggtagcagaagctacaattcagagggagaatgcatcggtgaaagccatcatagtgttagaaggatct |
33382050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 138 - 324
Target Start/End: Original strand, 33356380 - 33356563
Alignment:
| Q |
138 |
atggtttgtgaaaattttaattataatttgatggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggccagagttggttggagtgg |
237 |
Q |
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| T |
33356380 |
atggtttgtgaaa-ttttaaatataatttgatggttgaatg--aatcaatatattgtgtgtgttcaggtaagagttcatggccagagttggttggagtgg |
33356476 |
T |
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| Q |
238 |
aaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatctaatgtcccctttg |
324 |
Q |
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| T |
33356477 |
aaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatcttctgtcccctttg |
33356563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 33356305 - 33356374
Alignment:
| Q |
23 |
agtcatacatattgtaggatcaaaaaggcaaacaaaaatgtcttatgatgatgaatgcaaaggtaaggttttataat |
99 |
Q |
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| T |
33356305 |
agtcatacatattgaaggatcaaaaaggcaaac-aaaatgtc------tgatgaatgccaaggtaaggtgttataat |
33356374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 130 - 311
Target Start/End: Complemental strand, 39307185 - 39307011
Alignment:
| Q |
130 |
taaattaaatggtttgtgaaaattttaattataatttgatggttgaatgtgaatcaatatattgtgtgtgctcaggtaagagttcatggccagagttggt |
229 |
Q |
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| T |
39307185 |
taaattaaacggtttgtgaaa-tattaattataatttgatggttgaatt--aatcaatat----tgtgttctcaggtaagaactcatggccagagttggt |
39307093 |
T |
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| Q |
230 |
tggagtggaaggaaaggtagcagaagctacaattcaaagagagaatccattggtggatgccatcattgtgccagaaggatct |
311 |
Q |
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| T |
39307092 |
tggagtggaaggaaaggtagcagaagctacaattcagagtgagaatccattggtgaatgccatcattgtgccagaaggatct |
39307011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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