View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20645_high_15 (Length: 329)
Name: NF20645_high_15
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 33941065 - 33940769
Alignment:
| Q |
22 |
gcaaaatccaaatttagtaaatggactttaatttcactctcaaaagttaattgaaaggataaaggccctcaagcaaatatataccttagaatatannnnn |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33941065 |
gcaaaatccaaatttagtaaatggactttaatttcactctcaaaagttaattgaaaggataaaggccctcaagcaaatatataccttagaatatattttt |
33940966 |
T |
|
| Q |
122 |
nnggacagtaatatgtcttagaaactttaacctcccacaaatgcaacttattaaatacataaatatatatacgatatatctatgattttctatgttgtaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33940965 |
ttggacagtaatatgtcttagaaactttaacctcccacaaatgcaacttattaaatacataaatatatatacgatatatctatgattttctatgttgtaa |
33940866 |
T |
|
| Q |
222 |
acctattttgtaggttgaaggctcacgatcattttgataataacactgctctgcgtggcttaattttggcctgctagagaatccttgttgttctgtg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33940865 |
acctattttgtaggttgaaggctcacgatcattttgataagaacactgctctgcgtggcttaattttggcctgctagagaatccttgttgttctgtg |
33940769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University