View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20645_high_24 (Length: 252)
Name: NF20645_high_24
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40725133 - 40724891
Alignment:
| Q |
1 |
tttgccaaaatcacggggaaattgctttacaggtcctcatttttgctcaaaagtcccccaatttatcagaatgtatcttcccgtggaacaaatctattgg |
100 |
Q |
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| T |
40725133 |
tttgccaaaatcacggggaaattgctttacaggtcctcatttttgctcaaaagtcccccaatttatcagaatgtatcttcccgtggaacaaatctattgg |
40725034 |
T |
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| Q |
101 |
gagatgtgttctgattagcttaccaaacatacaagtagaaacatcctagtgttctgcttttgaagctagctctgaaattaaacgtaaaccaaaca-nnnn |
199 |
Q |
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| T |
40725033 |
gaaatgtgttctgattggcttaccaaacatacaagtagaaacatcctagtgttctgcttttgaagctagctctgaaattaaacgtaaaccaaacattttt |
40724934 |
T |
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| Q |
200 |
nnnnncaaggacttctttgaattaaaagttagatgcccctttg |
242 |
Q |
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| T |
40724933 |
tttttcaaggacttctttgaattaaaagttagatgcccctttg |
40724891 |
T |
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