View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20645_high_5 (Length: 591)
Name: NF20645_high_5
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Original strand, 34612045 - 34612608
Alignment:
| Q |
14 |
actttaaccaaaagaactcctatgtaaatcactagattacaagaagcatttacaagcagattgtgtgttgtctccataaaatcaaattacaagtaattgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34612045 |
actttaaccaaaagaactcctatgtaaatcactagattacaagaagcatttacaagcagattgtgtgttgtctccataaaatcaaattacaagtaattgt |
34612144 |
T |
|
| Q |
114 |
tggagatggatttcttgaacctccaaggatgcttttttgggtgactgcataataataatcccactgatacatttgagattgaattggttgagcctccaag |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34612145 |
tggagatggatttcttgaacctccaaggatgcttttttgggtgactgcataataataatcccactgatacatttgagat-gaattggttgagcctccaag |
34612243 |
T |
|
| Q |
214 |
gatgcattatttgaaagttgcttcaatgtggccactagtagttttgtataaatttataagtcatcaccaattcttcttctttattgatatggttgtctgg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34612244 |
gatgcattatttgaaagttgcttcaatgtggccactagtagttttgtataaatttataagtcatcaccaattcttcttctttattgatatggttgtctgg |
34612343 |
T |
|
| Q |
314 |
tgctcccatactaactagtaaacatgtaaagtagtattcaaaatatccaccaaatcaattttatgatcatgctcatatttannnnnnnacacaatacata |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34612344 |
tgctcccatactaactagtaaacatgtaaagtagtattcaaaatatccaccaaatcaattttatgatcatgctcatatttatttttttacacaatacata |
34612443 |
T |
|
| Q |
414 |
cattgaactccatattacaatgccgttagcaaacaaaagagttcagccacatatacaattttatattgcagccacctttagcaccaagtctgttacaatc |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34612444 |
cattgaactccatattacaatgccgttagcaaacaaaagagttcagccacatatacaattttatattgcagccacctttaacaccaagtctgttacaatc |
34612543 |
T |
|
| Q |
514 |
tgttagatcattaacttatattttatcgaactgtagcatataaagttaggttgtaagagattttt |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34612544 |
tgttagatcattaacttatattttatcgaactgtagtatataaagttaggttgtaagagattttt |
34612608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University