View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20645_low_1 (Length: 952)

Name: NF20645_low_1
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20645_low_1
NF20645_low_1
[»] chr4 (2 HSPs)
chr4 (368-947)||(18180712-18181290)
chr4 (312-359)||(53619667-53619714)
[»] scaffold0477 (1 HSPs)
scaffold0477 (368-947)||(9717-10297)
[»] scaffold0075 (1 HSPs)
scaffold0075 (368-613)||(20336-20581)
[»] chr6 (2 HSPs)
chr6 (17-359)||(28626012-28626377)
chr6 (308-359)||(357692-357743)
[»] chr8 (4 HSPs)
chr8 (698-947)||(37189370-37189616)
chr8 (487-574)||(24934029-24934116)
chr8 (309-359)||(500308-500358)
chr8 (317-359)||(6592656-6592698)
[»] scaffold0002 (3 HSPs)
scaffold0002 (842-936)||(244818-244912)
scaffold0002 (483-626)||(245202-245345)
scaffold0002 (835-870)||(207782-207817)
[»] chr7 (4 HSPs)
chr7 (854-940)||(27029783-27029873)
chr7 (308-359)||(983030-983081)
chr7 (312-359)||(28517266-28517313)
chr7 (309-359)||(21326814-21326864)
[»] chr1 (4 HSPs)
chr1 (533-588)||(36877788-36877843)
chr1 (309-359)||(29169769-29169819)
chr1 (308-359)||(45659622-45659674)
chr1 (308-359)||(19035528-19035579)
[»] chr2 (5 HSPs)
chr2 (313-359)||(17344719-17344765)
chr2 (308-359)||(5532500-5532551)
chr2 (317-363)||(44720400-44720446)
chr2 (310-359)||(18744931-18744980)
chr2 (312-359)||(27502443-27502490)
[»] chr3 (2 HSPs)
chr3 (308-359)||(53785790-53785841)
chr3 (308-359)||(39583204-39583255)
[»] chr5 (1 HSPs)
chr5 (308-363)||(33692030-33692085)
[»] scaffold0490 (1 HSPs)
scaffold0490 (309-359)||(6415-6465)
[»] scaffold0009 (1 HSPs)
scaffold0009 (308-358)||(103187-103237)


Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 368 - 947
Target Start/End: Complemental strand, 18181290 - 18180712
Alignment:
Q  368 tcgtatagtagatataccaagttattgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatatagaactctgattcaaaattctcttgaa 467  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18181290 tcgtatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatctagaactctgattcaaaattctcttgaa 18181191  T
Q  468 tcagccccccgcaaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttggtttga 567  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18181190 tcagccccccgcgaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatagtaaatgggttggtttga 18181091  T
Q  568 aaattaatgaattgctggttgtagaatattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgta 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18181090 aaattaatgaattgctggttgtagaatattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatgta 18180991  T
Q  668 tagaccgtgggtgggtataggaaaattgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatc 767  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||    
T  18180990 taga-cgtgggtgggtataggaaatttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaatc 18180892  T
Q  768 cacatcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcg 867  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18180891 cacatcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcg 18180792  T
Q  868 gtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc 947  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18180791 gtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc 18180712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 53619714 - 53619667
Alignment:
Q  312 cccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||| |||||||||||||| || |||||||||||||||||||||||||    
T  53619714 ccctaaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgtt 53619667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 368 - 947
Target Start/End: Complemental strand, 10297 - 9717
Alignment:
Q  368 tcgtatagtagatataccaagttattgttgcaaacccgaagatattattacagcgaaggatgaacaaaaa-ta-tagaactctgattcaaaattctcttg 465  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  10297 tcgtatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaaatactagaactctgattcaaaattctcttg 10198  T
Q  466 aatcagccccccgcaaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttggttt 565  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10197 aatcagccccccgcgaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatagtaaatgggttggttt 10098  T
Q  566 gaaaattaatgaattgctggttgtagaatattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10097 gaaaattaatgaattgctggttgtagaatattattctcgtcagacttaaacctaattaaaataagaataattttgatccgaggatttccccccattcatg 9998  T
Q  666 tatagaccgtgggtgggtataggaaaattgttattccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaa 765  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||    
T  9997 tataga-cgtgggtgggtataggaaatttgttattccttgcccactttattccacgattttttttattacagaaaacagaaataaattaggaatagagaa 9899  T
Q  766 tccacatcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccct 865  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9898 tccacatcaaagttggaataatgatatctatttgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccct 9799  T
Q  866 cggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc 947  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9798 cggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgattatgtcc 9717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 210; Significance: 1e-114; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 368 - 613
Target Start/End: Complemental strand, 20581 - 20336
Alignment:
Q  368 tcgtatagtagatataccaagttattgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatatagaactctgattcaaaattctcttgaa 467  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20581 tcgtatagtagatataccaagttatcgttgcaaacccgaagatattattacagcgaaggatgaacaaaaatctagaactctgattcaaaattctcttgaa 20482  T
Q  468 tcagccccccgcaaaaaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttggtttga 567  Q
    |||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  20481 tcagccccccacgaagaattgccaatccatttgactctttatccattccaatataaaggattagtcaatcaaatattagatagtaaatgggttggtttga 20382  T
Q  568 aaattaatgaattgctggttgtagaatattattctcgtcagactta 613  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  20381 aaattaatgaattgctggctgtagaatattattctcgtcagactta 20336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 28626377 - 28626012
Alignment:
Q  17 agctaaaaactgagagttacttttacaagttgagattctctcctttccttaggaaatggaagtgtctgttattattttttatgaggaattcaccnnnnnn 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||            
T  28626377 agctaagaactgagagttacttttacaagttgagattctctcctttccttaggaaatggaagtgtctgttattattttttatgaggaagtcatattctta 28626278  T
Q  117 nn----------aagaagtggatttt-ctacctgtcatattctttaagattttgatctttatct-------------tagtgttacatgatcaatttcta 192  Q
                |||||||||||||| ||||||||||||||||| |||||||||||||||||||             |||||||||||||||||||||||    
T  28626277 gtgtagttttttaagaagtggatttttctacctgtcatattctt-aagattttgatctttatctgatttatttatcttagtgttacatgatcaatttcta 28626179  T
Q  193 tactaataacatatatcaaaacatgtcaacttcttaaaccgaacaaaattaccttaaaaatattatactatatagttgcaaaatacttaaatttatctcg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||     
T  28626178 tactaataacatatatcaaaacatgtcaacttcttaaaccgaacaaaattgcctt-aaaatattagactatatagttgcaaaatacttaaatttatctcc 28626080  T
Q  293 aaaagaataaggata-gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  28626079 aaaagaataaggataggcagcccttaaagctgcgtcaagtaaggtggctaaacacgagaaaacgtgtt 28626012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 357692 - 357743
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||| |||||| ||||||| || |||||||||||||||||| ||||||    
T  357692 gcagccctaaaagcttcgtcaagcaaagtggccaaacatgagaaagcgtgtt 357743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 698 - 947
Target Start/End: Complemental strand, 37189616 - 37189370
Alignment:
Q  698 attccttgcccactttattccactannnnnnnnattacagaaaacagaaataaattaggaatagagaatccacatcaaagttggaataatgatatctatt 797  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37189616 attccttgcccactttattccactattttttttattacagaaaacagaaataaattaggaatagagaattcacatcaaagttggaataatgatatctatt 37189517  T
Q  798 tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccag 897  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  37189516 tgcaaacattgaggtcagtaacattgatgaacttgataagggtgcggaaagagag---ttcgaaccctcggtaaacaaaaagcctacatagcagttccag 37189420  T
Q  898 tgctacgccttcaaccactcggccatctctcctacataatgatgatgtcc 947  Q
    | || | |||||||||||||||||||||||||||||||||||| ||||||    
T  37189419 tactgcaccttcaaccactcggccatctctcctacataatgattatgtcc 37189370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 487 - 574
Target Start/End: Original strand, 24934029 - 24934116
Alignment:
Q  487 tgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttggtttgaaaattaa 574  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24934029 tgccaacccatttgactcttcatccattctaatataaaggattagtcaatcaaataatagatagtaaatgggttggtttgaaaattaa 24934116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 500358 - 500308
Alignment:
Q  309 cagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    ||||||| |||| ||||||||| || |||||||||||||||||||||||||    
T  500358 cagccctaaaagttgcgtcaagcaaagtggccaaacatgagaaaacgtgtt 500308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 6592698 - 6592656
Alignment:
Q  317 aaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||||||||| || |||||||||||||||||| ||||||    
T  6592698 aaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtt 6592656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 842 - 936
Target Start/End: Complemental strand, 244912 - 244818
Alignment:
Q  842 cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataa 936  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||    
T  244912 cggaaagagagggattcgaaccctcggtaaacaaaaagcctacatagcagttccaatgctacgccttgaaccgctcggccatctttcctacataa 244818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 483 - 626
Target Start/End: Complemental strand, 245345 - 245202
Alignment:
Q  483 aaattgccaatccatttgactcttgatccattccaatataaaggattagtcaatcaaataatagatcgtaaatgggttggtttgaaaattaatgaattgc 582  Q
    |||||||||| |||||||||  ||||  ||||  ||||||||||| |||| ||| ||||  ||||| | || ||||| ||| | ||||| ||||| |||     
T  245345 aaattgccaagccatttgacgattgacacattggaatataaaggactagtaaataaaatcctagataggaagtgggtcggtctcaaaataaatgagttgt 245246  T
Q  583 tggttgtagaatattattctcgtcagacttaaacctaattaaaa 626  Q
    | |||||||||||||| ||||||||||||| ||| |||| ||||    
T  245245 tagttgtagaatattactctcgtcagacttgaacttaatgaaaa 245202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 835 - 870
Target Start/End: Original strand, 207782 - 207817
Alignment:
Q  835 aagggtgcggaaagagagggattcgaaccctcggta 870  Q
    ||||| ||||||||||||||||||||||||||||||    
T  207782 aagggagcggaaagagagggattcgaaccctcggta 207817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 854 - 940
Target Start/End: Original strand, 27029783 - 27029873
Alignment:
Q  854 gattcgaaccctcggtaaacaaaaa----gcctacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat 940  Q
    ||||||||||||||||||| |||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27029783 gattcgaaccctcggtaaaaaaaaaaaaagcttacatagcagttccagtgctacgccttcaaccactcggccatctctcctacataatgat 27029873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 983081 - 983030
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||| | |||||||||||||| || |||||||||||||||||| ||||||    
T  983081 gcagccataaaagctgcgtcaagcaaagtggccaaacatgagaaatcgtgtt 983030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 28517266 - 28517313
Alignment:
Q  312 cccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||| |||||||||||||| || |||||||||||||||||| ||||||    
T  28517266 ccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtt 28517313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 21326814 - 21326864
Alignment:
Q  309 cagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    ||||||| ||||| |||||||| || |||||||||||||||||| ||||||    
T  21326814 cagccctaaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgtt 21326864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 533 - 588
Target Start/End: Complemental strand, 36877843 - 36877788
Alignment:
Q  533 caatcaaataatagatcgtaaatgggttggtttgaaaattaatgaattgctggttg 588  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36877843 caatcaaataatagatagtaaatgggttggtttgaaaattaatgaattgctggttg 36877788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 29169769 - 29169819
Alignment:
Q  309 cagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  29169769 cagcccttaaagttgtgtcaagtaaggtggccaaacacgagaaaacgtgtt 29169819  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 45659622 - 45659674
Alignment:
Q  308 gcagcccttaaa-gctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  45659622 gcagcccttaaaagctgcgtcaagtaaggtggccaaacacgagaaagcgtgtt 45659674  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 19035579 - 19035528
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||| |||||||||||||| || |||||||||||||||||| ||||||    
T  19035579 gcagccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtt 19035528  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 17344765 - 17344719
Alignment:
Q  313 ccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  17344765 ccttaaagctgcgtcaagtaaggtggccaaacacgagaaaacgtgtt 17344719  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 5532551 - 5532500
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||| |||||||||||||| || |||| ||||||||||||||||||||    
T  5532551 gcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgtt 5532500  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 44720446 - 44720400
Alignment:
Q  317 aaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgttatga 363  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  44720446 aaagccgcgtcaagtaagatggccaaacatgaaaaaacgtgttatga 44720400  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 18744931 - 18744980
Alignment:
Q  310 agcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||||||| ||||||||| ||||||||||||| |||||| ||||||    
T  18744931 agcccttaaagcagcgtcaagttaggtggccaaacacgagaaagcgtgtt 18744980  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 27502490 - 27502443
Alignment:
Q  312 cccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||| |||||||||||||| || |||| ||||||||||||||||||||    
T  27502490 ccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgtt 27502443  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 308 - 359
Target Start/End: Complemental strand, 53785841 - 53785790
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  53785841 gcagcccttaaagccgcgtcaagtaaggtggccaaacacgagaaagcgtgtt 53785790  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 39583204 - 39583255
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    |||||||| |||||||||||||| || |||||||||||||||||| ||||||    
T  39583204 gcagccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtt 39583255  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 33692030 - 33692085
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgttatga 363  Q
    |||| ||| |||||||||||||| || |||||||||||||| ||||||||||||||    
T  33692030 gcaggcctaaaagctgcgtcaagcaaagtggccaaacatgacaaaacgtgttatga 33692085  T

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Target: scaffold0490 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 6465 - 6415
Alignment:
Q  309 cagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgtt 359  Q
    ||||||| |||| |||||||||||| |||||||||||||||||| ||||||    
T  6465 cagccctaaaagttgcgtcaagtaaagtggccaaacatgagaaagcgtgtt 6415  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 103237 - 103187
Alignment:
Q  308 gcagcccttaaagctgcgtcaagtaaggtggccaaacatgagaaaacgtgt 358  Q
    |||||||| |||||||||||||||||| |||||||||| |||||| |||||    
T  103237 gcagccctcaaagctgcgtcaagtaagatggccaaacacgagaaagcgtgt 103187  T

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