View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20645_low_10 (Length: 376)
Name: NF20645_low_10
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 51670468 - 51670122
Alignment:
| Q |
19 |
ataatagttaatagttaggacaaataataagttgtcagggcaagctattatcactagattttcaaaacagagaatttatgactcaagcatgcgggtgagt |
118 |
Q |
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| T |
51670468 |
ataatagttaatagttaggacagataataagatgtcagggcaagctattatcactagattttcaaaacagagaatttatgactcaagcatgcgggtgagt |
51670369 |
T |
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| Q |
119 |
tcgacgaaatcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatcagtgccacgcaaggatttcactcaccgtttatccaa |
218 |
Q |
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| T |
51670368 |
tcgacaaaatcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatcagtgccacgcaaggatttcactcaccgtttatccaa |
51670269 |
T |
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| Q |
219 |
acatgcactatattttcacaaagcagaaactaacttgcctgaattgcattatgtgcgagatatttctgcctactaccactgaagctgacatcaattcgat |
318 |
Q |
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| T |
51670268 |
acatgcactatattttcacaaagcagaaactaacttgcctgaattgcattatgtgcgagatatttctgcctactaccactgaagctgacatcaattcgat |
51670169 |
T |
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| Q |
319 |
cccaaatcactgttgttaggcctctgatcatttcctctgcgagtatt |
365 |
Q |
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| T |
51670168 |
cccaactcactgttgttaggcctctgatcatttcctctgcgagtatt |
51670122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 19390404 - 19390474
Alignment:
| Q |
113 |
gtgagttcgacgaaatcacactagcaccgtgattttattgaagttccaaattataacttttgttaaaatca |
183 |
Q |
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| T |
19390404 |
gtgagttcgaagaaatcacagtagcaccgtgattttgttgaagcttcaaattgttgcttttgataaaatca |
19390474 |
T |
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