View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20645_low_11 (Length: 375)
Name: NF20645_low_11
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 33308990 - 33309340
Alignment:
| Q |
17 |
ggaacctcacttggttgtttgaaaacctccatcaaggaaacaattaaattaaatgttgatgataactctcttaggaatccaagatgctatgattttggag |
116 |
Q |
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| T |
33308990 |
ggaacctcgcttggttgtttgaaaacctccaccaaggaaacaattaaattaaatgttgatggtaactctcttagtaatccaagacgctatgattttgaag |
33309089 |
T |
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| Q |
117 |
gtttaaaccatgacactaatgtaaattgaatatcgagttccttcaacggttgtgtgacattactaccaatacgaatgcagagctagaagctatctctaac |
216 |
Q |
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| T |
33309090 |
gtttaaaccatgacaccaatgtaaattggatatcgagttccttcagcggttgtgtggcattactatcaatacgaatgcagagctggaagctatctctaac |
33309189 |
T |
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| Q |
217 |
aatcttgagatgacttggag-nnnnnnnnaaggagcatggagtcatggtttttgctattttaaaaaattgaggatggaattgtcaaacttttatttcaag |
315 |
Q |
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| T |
33309190 |
aatcttgagatgacttggagtttttttttaaggagcatggagtcatggtttttgctattttaaaaaattgatgatggaattgtcacacttttatttcaag |
33309289 |
T |
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| Q |
316 |
aacaaaaatgatc-atttttgttattccatctatttacctcaaaccctttgc |
366 |
Q |
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| T |
33309290 |
aac-aaaatgatcaatttttgttattccatctatttacctcaaaccctttgc |
33309340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 22081780 - 22081744
Alignment:
| Q |
175 |
attactaccaatacgaatgcagagctagaagctatct |
211 |
Q |
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| T |
22081780 |
attactaccaatatgaatgcagagctacaagctatct |
22081744 |
T |
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