View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20645_low_12 (Length: 345)

Name: NF20645_low_12
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20645_low_12
NF20645_low_12
[»] chr5 (8 HSPs)
chr5 (12-333)||(29587601-29587922)
chr5 (202-248)||(13398351-13398397)
chr5 (206-256)||(10517655-10517705)
chr5 (213-247)||(27249570-27249604)
chr5 (194-236)||(38685298-38685340)
chr5 (212-265)||(30271679-30271732)
chr5 (211-251)||(27976380-27976420)
chr5 (226-266)||(34806154-34806194)
[»] chr6 (12 HSPs)
chr6 (202-266)||(2468480-2468544)
chr6 (192-251)||(4240911-4240970)
chr6 (203-253)||(5663937-5663987)
chr6 (196-246)||(32920990-32921040)
chr6 (201-246)||(32931497-32931542)
chr6 (200-248)||(34443049-34443097)
chr6 (201-232)||(21889307-21889338)
chr6 (195-246)||(31579775-31579826)
chr6 (212-249)||(8427749-8427786)
chr6 (200-241)||(32862762-32862803)
chr6 (218-246)||(10174708-10174736)
chr6 (204-244)||(34406440-34406480)
[»] chr4 (11 HSPs)
chr4 (202-266)||(27131680-27131744)
chr4 (202-260)||(25260527-25260585)
chr4 (201-251)||(22402386-22402436)
chr4 (202-251)||(1678677-1678726)
chr4 (204-256)||(31215034-31215086)
chr4 (207-265)||(32754601-32754659)
chr4 (204-242)||(41052607-41052645)
chr4 (207-245)||(51238012-51238050)
chr4 (202-251)||(2802094-2802143)
chr4 (202-246)||(21606601-21606645)
chr4 (200-256)||(31201830-31201886)
[»] chr8 (8 HSPs)
chr8 (200-247)||(16330988-16331035)
chr8 (195-260)||(28478048-28478113)
chr8 (204-247)||(3943757-3943800)
chr8 (205-256)||(28616588-28616639)
chr8 (205-247)||(9581881-9581923)
chr8 (224-266)||(10319307-10319349)
chr8 (202-247)||(29651630-29651675)
chr8 (216-249)||(30671481-30671514)
[»] chr1 (6 HSPs)
chr1 (200-245)||(16567303-16567348)
chr1 (200-247)||(33318847-33318894)
chr1 (195-247)||(2445448-2445500)
chr1 (203-253)||(10042292-10042342)
chr1 (211-265)||(24127603-24127657)
chr1 (205-253)||(40494258-40494306)
[»] chr3 (7 HSPs)
chr3 (192-248)||(1116399-1116455)
chr3 (212-266)||(31652436-31652490)
chr3 (195-239)||(18405035-18405080)
chr3 (202-247)||(42065123-42065168)
chr3 (217-254)||(45028351-45028388)
chr3 (202-246)||(20167629-20167673)
chr3 (203-247)||(35335608-35335652)
[»] chr2 (10 HSPs)
chr2 (200-260)||(5453704-5453764)
chr2 (211-257)||(11496009-11496055)
chr2 (192-244)||(8733552-8733605)
chr2 (195-259)||(31095138-31095202)
chr2 (195-243)||(39941300-39941348)
chr2 (212-258)||(22556234-22556280)
chr2 (195-253)||(43886595-43886652)
chr2 (212-248)||(15804120-15804156)
chr2 (230-258)||(32199512-32199540)
chr2 (205-249)||(32915855-32915899)
[»] chr7 (2 HSPs)
chr7 (204-246)||(438688-438730)
chr7 (220-261)||(43434507-43434548)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 29587922 - 29587601
Alignment:
Q  12 atgaagtggctgacgaagaattgcacaaaaataatcaaaccatggctttatctgaactagaaggagaaactgataaggttaccgacatagtacatatgaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29587922 atgaagtggctgacgaagaattgcacaaaaataatcaaaccatggctttatctgaactagaaggagaaactgataaggttaccgacatagtacatatgaa 29587823  T
Q  112 tgatcaagaaagtacttcatcttgaggatataaccttagctatgtagtactgacacttcatattaaaggcgagacccacctctgacattgacacatgtgg 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29587822 tgatcaagaaagtacttcatcttgaggatatgaccttagctatgtagtactgacacttcatattaaaggcgagacccacctctgacattgacatatgtgg 29587723  T
Q  212 ttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtgccaatacttcataatagctgaaaaggaagtagagtgtttctgaac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29587722 ttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtgccaatacttcataatagctgaaaaggaagtagagtgtttctgaac 29587623  T
Q  312 gggcaaatagtgatagtgatga 333  Q
    ||| ||||||||||||||||||    
T  29587622 gggaaaatagtgatagtgatga 29587601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 13398397 - 13398351
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattacc 248  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||||    
T  13398397 acacatatggctacatttaatcacttctattttcttaaattattacc 13398351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 10517705 - 10517655
Alignment:
Q  206 atgtggttacatttaatcacttccattttcttaaattattaccggtgttta 256  Q
    |||| ||| |||||||||||||||||| |||| ||||||||||| ||||||    
T  10517705 atgtagttgcatttaatcacttccattatcttcaattattaccgatgttta 10517655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 27249604 - 27249570
Alignment:
Q  213 tacatttaatcacttccattttcttaaattattac 247  Q
    ||||||||||||||||||||||| |||||||||||    
T  27249604 tacatttaatcacttccattttcataaattattac 27249570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 38685298 - 38685340
Alignment:
Q  194 tgacattgacacatgtggttacatttaatcacttccattttct 236  Q
    ||||| ||||||||||||||||||| ||| |||||||||||||    
T  38685298 tgacactgacacatgtggttacattcaattacttccattttct 38685340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 30271732 - 30271679
Alignment:
Q  212 ttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagt 265  Q
    ||||||| ||||||||| || ||||||||| ||||| |||||||||||| ||||    
T  30271732 ttacattcaatcacttctatattcttaaatcattactggtgtttacgtgtcagt 30271679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 27976420 - 27976380
Alignment:
Q  211 gttacatttaatcacttccattttcttaaattattaccggt 251  Q
    ||||| || |||||||| |||||||||||||||||||||||    
T  27976420 gttacgttcaatcactttcattttcttaaattattaccggt 27976380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 34806194 - 34806154
Alignment:
Q  226 ttccattttcttaaattattaccggtgtttacgtgacagtg 266  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  34806194 ttccattttcttaaattattatcggtgtctacgtgtcagtg 34806154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 2468480 - 2468544
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtg 266  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||  ||| |||||| |||||    
T  2468480 acacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtg 2468544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 4240911 - 4240970
Alignment:
Q  192 tctgacattgacacatgtggttacatttaatcacttccattttcttaaattattaccggt 251  Q
    ||||||| ||||||||| | |||||||| ||||||| |||||||||||||||||| ||||    
T  4240911 tctgacactgacacatgcgattacatttcatcactttcattttcttaaattattaacggt 4240970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 5663937 - 5663987
Alignment:
Q  203 cacatgtggttacatttaatcacttccattttcttaaattattaccggtgt 253  Q
    |||||||||||||||||||||||||||||||| | | |||||||| |||||    
T  5663937 cacatgtggttacatttaatcacttccattttatcatattattactggtgt 5663987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 32920990 - 32921040
Alignment:
Q  196 acattgacacatgtggttacatttaatcacttccattttcttaaattatta 246  Q
    |||||||||||||| | |||||| ||||||||| |||||||||||||||||    
T  32920990 acattgacacatgtagctacattaaatcacttcaattttcttaaattatta 32921040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 32931497 - 32931542
Alignment:
Q  201 gacacatgtggttacatttaatcacttccattttcttaaattatta 246  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||    
T  32931497 gacacatgtagttatatttaatcacttctattttcttaaattatta 32931542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 34443049 - 34443097
Alignment:
Q  200 tgacacatgtggttacatttaatcacttccattttcttaaattattacc 248  Q
    ||||||||||||||||||| |||||||| || ||||| |||||||||||    
T  34443049 tgacacatgtggttacattcaatcactttcactttctcaaattattacc 34443097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 21889338 - 21889307
Alignment:
Q  201 gacacatgtggttacatttaatcacttccatt 232  Q
    ||||||||||||||||||||||||||||||||    
T  21889338 gacacatgtggttacatttaatcacttccatt 21889307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 31579826 - 31579775
Alignment:
Q  195 gacattgacacatgtggttacatttaatcacttccattttcttaaattatta 246  Q
    ||||||||||| |||||||||||| |||||||| ||| |||||||| |||||    
T  31579826 gacattgacacgtgtggttacattcaatcacttacatgttcttaaactatta 31579775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 8427786 - 8427749
Alignment:
Q  212 ttacatttaatcacttccattttcttaaattattaccg 249  Q
    ||||||||||||| || |||||||||||||||||||||    
T  8427786 ttacatttaatcaatttcattttcttaaattattaccg 8427749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 32862762 - 32862803
Alignment:
Q  200 tgacacatgtggttacatttaatcacttccattttcttaaat 241  Q
    ||||||| ||||||||||| |||||||| |||||||||||||    
T  32862762 tgacacacgtggttacattcaatcactttcattttcttaaat 32862803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 10174736 - 10174708
Alignment:
Q  218 ttaatcacttccattttcttaaattatta 246  Q
    |||||||||||||||||||||||||||||    
T  10174736 ttaatcacttccattttcttaaattatta 10174708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 34406480 - 34406440
Alignment:
Q  204 acatgtggttacatttaatcacttccattttcttaaattat 244  Q
    |||| |||||||||| |||||||| ||||||||||||||||    
T  34406480 acatatggttacattcaatcactttcattttcttaaattat 34406440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 27131680 - 27131744
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtg 266  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||  ||| |||||| |||||    
T  27131680 acacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtg 27131744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 25260585 - 25260527
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtg 260  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |  ||||||||||    
T  25260585 acacatttggttacatttaattacttccattttcttaaattattatccatgtttacgtg 25260527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 22402436 - 22402386
Alignment:
Q  201 gacacatgtggttacatttaatcacttccattttcttaaattattaccggt 251  Q
    |||||||||||||||||| ||||||||| ||||||| || |||||||||||    
T  22402436 gacacatgtggttacattcaatcacttctattttctcaatttattaccggt 22402386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 1678726 - 1678677
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattaccggt 251  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||| ||||    
T  1678726 acacatgtagttacatttaatcactttcattttctcaaattattagcggt 1678677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 31215086 - 31215034
Alignment:
Q  204 acatgtggttacatttaatcacttccattttcttaaattattaccggtgttta 256  Q
    ||||||||||||||| ||| ||||| ||||| |||| ||||||||||||||||    
T  31215086 acatgtggttacattcaataacttctattttgttaacttattaccggtgttta 31215034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 32754659 - 32754601
Alignment:
Q  207 tgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagt 265  Q
    |||||||||||| |||||||| |||||||||||| ||||||  |||| |||||| ||||    
T  32754659 tgtggttacattcaatcactttcattttcttaaactattacaagtgtctacgtgtcagt 32754601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Complemental strand, 41052645 - 41052607
Alignment:
Q  204 acatgtggttacatttaatcacttccattttcttaaatt 242  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  41052645 acatgtggttacatttaattactttcattttcttaaatt 41052607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 51238012 - 51238050
Alignment:
Q  207 tgtggttacatttaatcacttccattttcttaaattatt 245  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  51238012 tgtgcttacattcaatcacttccattttcttaaattatt 51238050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 2802094 - 2802143
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattaccggt 251  Q
    |||||||||||||||||||||||||| |||| ||  ||||||||| ||||    
T  2802094 acacatgtggttacatttaatcactttcattctcccaaattattagcggt 2802143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 21606601 - 21606645
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattatta 246  Q
    |||||||| |||||| ||||||||||  |||||||||||||||||    
T  21606601 acacatgtagttacacttaatcacttttattttcttaaattatta 21606645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 31201886 - 31201830
Alignment:
Q  200 tgacacatgtggttacatttaatcacttccattttcttaaattattaccggtgttta 256  Q
    ||||||||||||||||||| ||  ||||| ||||| || | ||||||||||||||||    
T  31201886 tgacacatgtggttacattcaacaacttctattttgttgacttattaccggtgttta 31201830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 16331035 - 16330988
Alignment:
Q  200 tgacacatgtggttacatttaatcacttccattttcttaaattattac 247  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  16331035 tgacacatgtggttacatttaatcattttcattttcttaaattattac 16330988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 28478048 - 28478113
Alignment:
Q  195 gacattgacacatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtg 260  Q
    |||||||||||||   |||||||| ||||||||| ||||| |||||||||||| ||||| ||||||    
T  28478048 gacattgacacatacagttacattcaatcacttctatttttttaaattattacgggtgtctacgtg 28478113  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 3943800 - 3943757
Alignment:
Q  204 acatgtggttacatttaatcacttccattttcttaaattattac 247  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||    
T  3943800 acatgtggttacattcaatcacttttattttcttaaattattac 3943757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 28616639 - 28616588
Alignment:
Q  205 catgtggttacatttaatcacttccattttcttaaattattaccggtgttta 256  Q
    ||||||||||||||  ||| |||||||||||||||||| |||| ||||||||    
T  28616639 catgtggttacattcgatcgcttccattttcttaaattgttactggtgttta 28616588  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 9581923 - 9581881
Alignment:
Q  205 catgtggttacatttaatcacttccattttcttaaattattac 247  Q
    ||||||| ||||||||||||||| |||||||||||| ||||||    
T  9581923 catgtggctacatttaatcactttcattttcttaaactattac 9581881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 10319307 - 10319349
Alignment:
Q  224 acttccattttcttaaattattaccggtgtttacgtgacagtg 266  Q
    ||||||||||||||| |||||||||| ||| ||||||||||||    
T  10319307 acttccattttcttatattattaccgatgtctacgtgacagtg 10319349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 29651630 - 29651675
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattac 247  Q
    |||||||| ||||| |||||||||||| ||||||||||| ||||||    
T  29651630 acacatgttgttacgtttaatcacttctattttcttaaaatattac 29651675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 30671514 - 30671481
Alignment:
Q  216 atttaatcacttccattttcttaaattattaccg 249  Q
    ||||||||||||||||||||||||| ||||||||    
T  30671514 atttaatcacttccattttcttaaactattaccg 30671481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 16567348 - 16567303
Alignment:
Q  200 tgacacatgtggttacatttaatcacttccattttcttaaattatt 245  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  16567348 tgacacatgtggttacattcaatcatttccattttcttaaattatt 16567303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 33318894 - 33318847
Alignment:
Q  200 tgacacatgtggttacatttaatcacttccattttcttaaattattac 247  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||||    
T  33318894 tgacacatgtggttacatttaatcactctcattttcttaagttattac 33318847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 2445448 - 2445500
Alignment:
Q  195 gacattgacacatgtggttacatttaatcacttccattttcttaaattattac 247  Q
    ||||||| || ||||| ||||||| |||||||||||||||||||||| |||||    
T  2445448 gacattggcaaatgtgattacattcaatcacttccattttcttaaatgattac 2445500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 10042342 - 10042292
Alignment:
Q  203 cacatgtggttacatttaatcacttccattttcttaaattattaccggtgt 253  Q
    |||||||||||||||| ||||||||| ||||||  |||||||||| |||||    
T  10042342 cacatgtggttacattcaatcacttctattttcacaaattattactggtgt 10042292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 24127603 - 24127657
Alignment:
Q  211 gttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagt 265  Q
    |||||||| |||||||||| |||||| |||||| ||||||||||| |||| ||||    
T  24127603 gttacattcaatcacttcctttttctcaaattaataccggtgtttgcgtgtcagt 24127657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 40494258 - 40494306
Alignment:
Q  205 catgtggttacatttaatcacttccattttcttaaattattaccggtgt 253  Q
    |||||| ||| ||| |||||||| ||||| |||||||||||||||||||    
T  40494258 catgtgattaaattcaatcactttcatttgcttaaattattaccggtgt 40494306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 1116455 - 1116399
Alignment:
Q  192 tctgacattgacacatgtggttacatttaatcacttccattttcttaaattattacc 248  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||| |||||||||||    
T  1116455 tctgacattgacacatgtgattttatttaatcacttcaattttctcaaattattacc 1116399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 31652490 - 31652436
Alignment:
Q  212 ttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagtg 266  Q
    ||||||| ||||||||| ||||||||||||||||| |||||  || |||||||||    
T  31652490 ttacattcaatcacttctattttcttaaattattatcggtgactatgtgacagtg 31652436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 18405080 - 18405035
Alignment:
Q  195 gacattgacacatgtggttacattt-aatcacttccattttcttaa 239  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||    
T  18405080 gacactgacacatgtggttacctttcaatcacttccattttcttaa 18405035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 42065123 - 42065168
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattattac 247  Q
    ||||| ||||||||||| ||||||||| |||||||||| |||||||    
T  42065123 acacacgtggttacattcaatcacttctattttcttaatttattac 42065168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 45028351 - 45028388
Alignment:
Q  217 tttaatcacttccattttcttaaattattaccggtgtt 254  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  45028351 tttaatcacttccatttttttaaattattaccagtgtt 45028388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 20167673 - 20167629
Alignment:
Q  202 acacatgtggttacatttaatcacttccattttcttaaattatta 246  Q
    |||| |||||||||||| ||||||||| |||| ||||||||||||    
T  20167673 acacgtgtggttacattaaatcacttctatttccttaaattatta 20167629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 35335652 - 35335608
Alignment:
Q  203 cacatgtggttacatttaatcacttccattttcttaaattattac 247  Q
    |||| |||||| ||||||||||||| |||||||| ||||||||||    
T  35335652 cacaagtggttgcatttaatcactttcattttctcaaattattac 35335608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 5453764 - 5453704
Alignment:
Q  200 tgacacatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtg 260  Q
    |||| |||||||||| ||| |||||||||||||||||||||||| |||| |||| ||||||    
T  5453764 tgactcatgtggttatattcaatcacttccattttcttaaattactaccagtgtctacgtg 5453704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 11496055 - 11496009
Alignment:
Q  211 gttacatttaatcacttccattttcttaaattattaccggtgtttac 257  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  11496055 gttacatttgctcacttctattttcttaaattattaccggtgtttac 11496009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 8733552 - 8733605
Alignment:
Q  192 tctgacattgacacatgtggtta-catttaatcacttccattttcttaaattat 244  Q
    ||||||| ||||||||||||||| || | |||||||||||||||||||||||||    
T  8733552 tctgacactgacacatgtggttaacaataaatcacttccattttcttaaattat 8733605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 31095202 - 31095138
Alignment:
Q  195 gacattgacacatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgt 259  Q
    |||||| |||||||| |||| ||| ||| ||||||||||||| ||||||||||| ||||| ||||    
T  31095202 gacattaacacatgtagttatattcaattacttccattttctcaaattattaccagtgttgacgt 31095138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 39941348 - 39941300
Alignment:
Q  195 gacattgacacatgtggttacatttaatcacttccattttcttaaatta 243  Q
    |||| ||||||||||||||||||| |||| ||| |||||||||||||||    
T  39941348 gacagtgacacatgtggttacattcaatcgcttacattttcttaaatta 39941300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 22556280 - 22556234
Alignment:
Q  212 ttacatttaatcacttccattttcttaaattattaccggtgtttacg 258  Q
    ||||||| ||||||||| ||||||||||||||||||| |||| ||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacctgtgtctacg 22556234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 43886652 - 43886595
Alignment:
Q  195 gacattgacacatgtggttacatttaatcacttccattttcttaaattattaccggtgt 253  Q
    |||||||||||||||| |||| |||||||| || |||| |||||||||||||| |||||    
T  43886652 gacattgacacatgtgattacgtttaatcaatt-cattatcttaaattattactggtgt 43886595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 15804120 - 15804156
Alignment:
Q  212 ttacatttaatcacttccattttcttaaattattacc 248  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  15804120 ttacattcaatcacttccattttctcaaattattacc 15804156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 258
Target Start/End: Complemental strand, 32199540 - 32199512
Alignment:
Q  230 attttcttaaattattaccggtgtttacg 258  Q
    |||||||||||||||||||||||||||||    
T  32199540 attttcttaaattattaccggtgtttacg 32199512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 32915855 - 32915899
Alignment:
Q  205 catgtggttacatttaatcacttccattttcttaaattattaccg 249  Q
    |||||||||||||| ||||||||||||||| | |||| |||||||    
T  32915855 catgtggttacattcaatcacttccattttttcaaatcattaccg 32915899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 438688 - 438730
Alignment:
Q  204 acatgtggttacatttaatcacttccattttcttaaattatta 246  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  438688 acatgtggttacatttaattacttcaattttcttaaattatta 438730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 43434548 - 43434507
Alignment:
Q  220 aatcacttccattttcttaaattattaccggtgtttacgtga 261  Q
    |||||||| |||||||||||||||||| |||||| |||||||    
T  43434548 aatcactttcattttcttaaattattatcggtgtctacgtga 43434507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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