View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20645_low_13 (Length: 340)

Name: NF20645_low_13
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20645_low_13
NF20645_low_13
[»] chr3 (32 HSPs)
chr3 (8-182)||(25636357-25636531)
chr3 (296-340)||(27812565-27812609)
chr3 (296-339)||(2862699-2862742)
chr3 (297-339)||(21017198-21017240)
chr3 (297-339)||(26845163-26845205)
chr3 (297-339)||(46292581-46292623)
chr3 (298-339)||(11220992-11221033)
chr3 (298-339)||(39778552-39778593)
chr3 (300-340)||(11989517-11989557)
chr3 (204-240)||(25620877-25620913)
chr3 (288-340)||(41944148-41944200)
chr3 (210-293)||(25636238-25636324)
chr3 (300-339)||(45567410-45567449)
chr3 (297-332)||(45567684-45567719)
chr3 (288-339)||(50710693-50710744)
chr3 (296-339)||(50710890-50710933)
chr3 (126-176)||(25620943-25620993)
chr3 (297-339)||(31574526-31574568)
chr3 (301-339)||(35747965-35748003)
chr3 (297-339)||(44664894-44664936)
chr3 (297-339)||(44976752-44976794)
chr3 (297-339)||(50711268-50711310)
chr3 (301-339)||(53712254-53712292)
chr3 (298-339)||(14463396-14463437)
chr3 (298-339)||(20209150-20209191)
chr3 (298-339)||(35415515-35415556)
chr3 (298-339)||(44664621-44664662)
chr3 (299-340)||(44919898-44919939)
chr3 (298-339)||(50711129-50711170)
chr3 (296-332)||(14202076-14202112)
chr3 (210-238)||(25619990-25620018)
chr3 (296-332)||(28844012-28844048)
[»] chr7 (22 HSPs)
chr7 (297-339)||(23036646-23036688)
chr7 (296-339)||(21455827-21455870)
chr7 (289-339)||(38494905-38494955)
chr7 (298-339)||(34287790-34287831)
chr7 (298-339)||(47221968-47222009)
chr7 (296-339)||(8522322-8522365)
chr7 (296-339)||(41922280-41922323)
chr7 (296-339)||(49023575-49023618)
chr7 (297-339)||(21555890-21555932)
chr7 (297-339)||(24331378-24331420)
chr7 (297-339)||(29099447-29099489)
chr7 (297-339)||(38495187-38495229)
chr7 (289-339)||(42391287-42391337)
chr7 (297-339)||(43575323-43575365)
chr7 (297-339)||(45055321-45055363)
chr7 (297-339)||(45055595-45055637)
chr7 (297-339)||(47221706-47221748)
chr7 (298-339)||(12423845-12423886)
chr7 (298-339)||(31283426-31283467)
chr7 (298-339)||(44458057-44458098)
chr7 (311-339)||(17173366-17173394)
chr7 (296-332)||(45867443-45867479)
[»] chr1 (24 HSPs)
chr1 (298-340)||(24234808-24234850)
chr1 (297-339)||(6489145-6489187)
chr1 (297-339)||(35521480-35521522)
chr1 (286-339)||(17191186-17191239)
chr1 (296-339)||(5586760-5586803)
chr1 (296-339)||(27067204-27067247)
chr1 (296-339)||(44344021-44344064)
chr1 (297-339)||(730798-730840)
chr1 (297-339)||(5618070-5618112)
chr1 (297-339)||(6488870-6488912)
chr1 (297-339)||(8853368-8853410)
chr1 (297-339)||(17504316-17504358)
chr1 (297-339)||(29716427-29716469)
chr1 (297-339)||(34480183-34480225)
chr1 (298-332)||(43726213-43726247)
chr1 (298-339)||(4695209-4695250)
chr1 (298-339)||(8853096-8853137)
chr1 (298-339)||(25012920-25012961)
chr1 (298-339)||(28554190-28554231)
chr1 (298-339)||(31289254-31289295)
chr1 (298-339)||(39672836-39672877)
chr1 (299-339)||(26095763-26095803)
chr1 (295-339)||(35521222-35521266)
chr1 (291-339)||(40290086-40290134)
[»] chr8 (25 HSPs)
chr8 (296-340)||(43497474-43497518)
chr8 (290-339)||(34198827-34198876)
chr8 (299-339)||(35560929-35560969)
chr8 (300-339)||(18805748-18805787)
chr8 (296-339)||(26938184-26938227)
chr8 (300-339)||(26938457-26938496)
chr8 (296-339)||(30463912-30463955)
chr8 (296-339)||(33279211-33279254)
chr8 (296-339)||(39198613-39198656)
chr8 (297-339)||(148292-148334)
chr8 (297-339)||(8156981-8157023)
chr8 (297-339)||(21660725-21660767)
chr8 (298-340)||(28828488-28828530)
chr8 (297-339)||(36556808-36556850)
chr8 (298-340)||(40277501-40277543)
chr8 (297-339)||(42684786-42684828)
chr8 (298-339)||(13327262-13327303)
chr8 (298-339)||(26187401-26187442)
chr8 (298-339)||(27713037-27713078)
chr8 (298-339)||(30253899-30253940)
chr8 (298-339)||(34199108-34199149)
chr8 (298-339)||(37727461-37727502)
chr8 (298-335)||(38229886-38229923)
chr8 (298-338)||(10925376-10925416)
chr8 (299-339)||(29596403-29596443)
[»] chr2 (25 HSPs)
chr2 (296-340)||(1479026-1479070)
chr2 (299-339)||(29154336-29154376)
chr2 (298-339)||(23926391-23926432)
chr2 (298-339)||(44490304-44490345)
chr2 (291-339)||(10714281-10714329)
chr2 (299-339)||(33274670-33274710)
chr2 (296-339)||(1650776-1650819)
chr2 (296-339)||(9912186-9912229)
chr2 (296-339)||(10192082-10192125)
chr2 (296-339)||(13421350-13421393)
chr2 (297-339)||(341311-341353)
chr2 (297-339)||(341585-341627)
chr2 (289-339)||(15461528-15461578)
chr2 (301-339)||(22195927-22195965)
chr2 (297-339)||(26499421-26499463)
chr2 (297-339)||(29174921-29174963)
chr2 (297-339)||(30488353-30488395)
chr2 (298-339)||(2450088-2450129)
chr2 (298-339)||(26499684-26499725)
chr2 (298-339)||(35412150-35412191)
chr2 (295-332)||(42030536-42030573)
chr2 (296-332)||(4980639-4980675)
chr2 (297-333)||(9027084-9027120)
chr2 (299-339)||(28789140-28789180)
chr2 (299-339)||(33274396-33274436)
[»] chr6 (16 HSPs)
chr6 (296-339)||(9546408-9546451)
chr6 (296-339)||(32557410-32557453)
chr6 (297-339)||(13178496-13178538)
chr6 (298-339)||(2863580-2863621)
chr6 (298-339)||(2882883-2882924)
chr6 (290-339)||(21926056-21926105)
chr6 (298-339)||(28852188-28852229)
chr6 (292-339)||(1925110-1925157)
chr6 (296-339)||(1925424-1925467)
chr6 (296-339)||(9899193-9899236)
chr6 (297-339)||(2316762-2316804)
chr6 (297-339)||(9899468-9899510)
chr6 (301-339)||(22569036-22569074)
chr6 (298-339)||(9546684-9546725)
chr6 (298-335)||(24891625-24891662)
chr6 (296-332)||(1137025-1137061)
[»] chr5 (27 HSPs)
chr5 (296-339)||(2467057-2467100)
chr5 (301-339)||(22621060-22621098)
chr5 (298-340)||(22621319-22621361)
chr5 (298-339)||(13455947-13455988)
chr5 (298-339)||(19984535-19984576)
chr5 (298-339)||(24858403-24858444)
chr5 (300-339)||(2467332-2467371)
chr5 (296-339)||(3279461-3279504)
chr5 (296-339)||(6541482-6541525)
chr5 (296-339)||(12854849-12854892)
chr5 (296-339)||(16736799-16736842)
chr5 (297-339)||(1643538-1643580)
chr5 (298-332)||(3168094-3168128)
chr5 (297-339)||(12875663-12875705)
chr5 (298-340)||(16737075-16737117)
chr5 (297-339)||(40952066-40952108)
chr5 (298-339)||(2426229-2426270)
chr5 (298-339)||(7601866-7601907)
chr5 (298-339)||(14871734-14871775)
chr5 (298-339)||(19131143-19131184)
chr5 (290-339)||(32994459-32994508)
chr5 (298-339)||(33429806-33429847)
chr5 (298-339)||(39589615-39589656)
chr5 (298-339)||(42611054-42611095)
chr5 (288-328)||(13697308-13697348)
chr5 (287-339)||(32458091-32458143)
chr5 (296-332)||(37943809-37943845)
[»] scaffold0077 (1 HSPs)
scaffold0077 (298-340)||(9921-9963)
[»] chr4 (30 HSPs)
chr4 (298-339)||(18568299-18568340)
chr4 (298-339)||(31857854-31857895)
chr4 (298-339)||(37068685-37068726)
chr4 (298-339)||(45655965-45656006)
chr4 (299-339)||(49498426-49498466)
chr4 (296-339)||(20984187-20984230)
chr4 (296-339)||(25331813-25331856)
chr4 (296-339)||(26842798-26842841)
chr4 (296-339)||(32488582-32488625)
chr4 (297-340)||(41376583-41376626)
chr4 (301-339)||(9644755-9644793)
chr4 (297-339)||(9902652-9902694)
chr4 (297-339)||(10993624-10993666)
chr4 (297-339)||(16019956-16019998)
chr4 (297-339)||(16530317-16530359)
chr4 (301-339)||(17688023-17688061)
chr4 (297-339)||(23963121-23963163)
chr4 (297-339)||(32922340-32922382)
chr4 (297-339)||(41944170-41944212)
chr4 (301-339)||(42009440-42009478)
chr4 (297-339)||(52654205-52654247)
chr4 (298-339)||(32922067-32922108)
chr4 (298-335)||(38556229-38556266)
chr4 (298-339)||(52538152-52538193)
chr4 (298-339)||(52653931-52653972)
chr4 (298-339)||(54997128-54997169)
chr4 (299-339)||(9645044-9645084)
chr4 (296-340)||(16020229-16020273)
chr4 (296-340)||(20983912-20983956)
chr4 (300-340)||(54036866-54036906)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 25636531 - 25636357
Alignment:
Q  8 tgtcgaagaaaatgagtcgatactgcttataggaaagttatgtgttctagaatatgactaaaagcaacagtgatttgattgtcaatctatacgatatata 107  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||    
T  25636531 tgtcgaaaaaaatgagtcgatattgcttataggaaagttatgtgttctagaatatgactaaaagcaacagtgatttgattgtcaatctacacaatttata 25636432  T
Q  108 ttgtatataacaaattcgggatgaaagtggaatagatgcaataaaatacaggaaaattataagattgttttcaaa 182  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  25636431 ttgtatataacaatttcgggatgaaagtggaatagatgcaataaaatacatgaaaattataagattatttgcaaa 25636357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 27812565 - 27812609
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  27812565 aaggcaaaattacacttttagttccttaacttaattttaggtaat 27812609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 2862699 - 2862742
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  2862699 aaggcaaaattacacttttagtcccttaacttaattttaggtaa 2862742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 21017240 - 21017198
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  21017240 aggcaaaattacacttttagttccttaacttaatttcaggtaa 21017198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 26845205 - 26845163
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  26845205 aggcaaaattacaattttagtccctcaacttaattttaggtaa 26845163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 46292581 - 46292623
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  46292581 aggcaaaattacacttttagttccttaacttaatttcaggtaa 46292623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 11220992 - 11221033
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  11220992 ggcaaaattacacttttagtcccttaacttaattttaggtaa 11221033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 39778593 - 39778552
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  39778593 ggcaaaattacacttttagtcccttaacttaattttaggtaa 39778552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 11989517 - 11989557
Alignment:
Q  300 caaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  11989517 caaaattacacttttagtcccttaacttaattttaggtaat 11989557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 25620913 - 25620877
Alignment:
Q  204 taatagaagctgataaacttgtttgaactttgaaaaa 240  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25620913 taatataagctgataaacttgtttgaactttgaaaaa 25620877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 41944200 - 41944148
Alignment:
Q  288 ataaattgaaggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||  ||||||||||||| ||||||| ||||||||| ||||||||||||    
T  41944200 ataaattttaggcaaaattacacttttagtcccttaactttattttaggtaat 41944148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 25636324 - 25636238
Alignment:
Q  210 aagctgataaacttgtttgaactttgaaaaaagaactt--gcttcattctatatttactga-tattactactaatagttttataaat 293  Q
    ||||||| ||||||||||||||||  |||||| || ||  ||| ||||||||||||||||| | |||||| ||| ||||||||||||    
T  25636324 aagctgacaaacttgtttgaacttaaaaaaaaaaatttttgctacattctatatttactgattgttactattaaaagttttataaat 25636238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 45567410 - 45567449
Alignment:
Q  300 caaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  45567410 caaaattacacttttagtcccttaacttaattttaggtaa 45567449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 45567719 - 45567684
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattt 332  Q
    ||||||||||||| ||||||||||||||||||||||    
T  45567719 aggcaaaattacacttttagttccttaacttaattt 45567684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 50710693 - 50710744
Alignment:
Q  288 ataaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||| |||||| ||||||| ||||||| |||||||||||||| ||||||    
T  50710693 ataaattaaaggcagaattacacttttagtcccttaacttaatttcaggtaa 50710744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 50710890 - 50710933
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  50710890 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 50710933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 25620993 - 25620943
Alignment:
Q  126 ggatgaaagtggaatagatgcaataaaatacaggaaaattataagattgtt 176  Q
    ||||| |||||||||| ||||||||||||||| ||||||||| | ||||||    
T  25620993 ggatggaagtggaatacatgcaataaaatacatgaaaattattaaattgtt 25620943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 31574568 - 31574526
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  31574568 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 31574526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 35748003 - 35747965
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  35748003 aaaattacacttttagttccttaacttaatttcaggtaa 35747965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 44664936 - 44664894
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||    
T  44664936 aggcaaaattacacttttagtcccttaatttaattttaggtaa 44664894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 44976752 - 44976794
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||    
T  44976752 aggcaaaattacagttttagtcccttaacttaattttatgtaa 44976794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 50711310 - 50711268
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  50711310 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 50711268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 53712254 - 53712292
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  53712254 aaaattacagttttagtcccttaacttaattttaggtaa 53712292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 14463437 - 14463396
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  14463437 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 14463396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 20209150 - 20209191
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  20209150 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 20209191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 35415556 - 35415515
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  35415556 ggcaaaattacatttttagtcccttaacttaatttcaggtaa 35415515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 44664621 - 44664662
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  44664621 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 44664662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 44919898 - 44919939
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  44919898 gcaaaattacatttttagtcccttaacttaatttcaggtaat 44919939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 50711170 - 50711129
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  50711170 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 50711129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 14202112 - 14202076
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  14202112 aaggcaaaattacacttttagtcccttaacttaattt 14202076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 25620018 - 25619990
Alignment:
Q  210 aagctgataaacttgtttgaactttgaaa 238  Q
    |||||||||||||||||||||||||||||    
T  25620018 aagctgataaacttgtttgaactttgaaa 25619990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 28844048 - 28844012
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  28844048 aaggcaaaattacacttttagtcccttaacttaattt 28844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 23036646 - 23036688
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  23036646 aggcaaaattacaattttagtcccttaacttaattttaggtaa 23036688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 21455870 - 21455827
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  21455870 aaggcaaaattacacttttagttccttaatttaattttaggtaa 21455827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 38494905 - 38494955
Alignment:
Q  289 taaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||| ||||||    
T  38494905 taaattgaaggcaaagttacacttttagtcccttaacttaatttcaggtaa 38494955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 34287831 - 34287790
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  34287831 ggcaaaattacaattttagtcccttaacttaatttcaggtaa 34287790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 47222009 - 47221968
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  47222009 ggcaaaattacacttttagttccttaacttaatttcaggtaa 47221968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 8522322 - 8522365
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  8522322 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 8522365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 41922280 - 41922323
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  41922280 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 41922323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 49023575 - 49023618
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  49023575 aaggcaaaattacatttttagtcccttaacttaatttcaggtaa 49023618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 21555890 - 21555932
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  21555890 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 21555932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 24331378 - 24331420
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  24331378 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 24331420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 29099489 - 29099447
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  29099489 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 29099447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 38495229 - 38495187
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  38495229 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 38495187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 42391287 - 42391337
Alignment:
Q  289 taaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||| | |||||||||||| ||||||| |||||||||||||| ||||||    
T  42391287 taaattaatggcaaaattacacttttagtcccttaacttaatttcaggtaa 42391337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 43575365 - 43575323
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  43575365 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 43575323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 45055321 - 45055363
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  45055321 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 45055363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 45055637 - 45055595
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  45055637 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 45055595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 47221706 - 47221748
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  47221706 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 47221748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 12423845 - 12423886
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  12423845 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 12423886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 31283467 - 31283426
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||| ||||    
T  31283467 ggcaaaattacacttttagtcccttaacttaattttatgtaa 31283426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 44458098 - 44458057
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  44458098 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 44458057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 339
Target Start/End: Complemental strand, 17173394 - 17173366
Alignment:
Q  311 ttttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||||||||||||||    
T  17173394 ttttagttccttaacttaattttaggtaa 17173366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 45867443 - 45867479
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  45867443 aaggcaaaattacacttttagtcccttaacttaattt 45867479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 24234850 - 24234808
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  24234850 ggcaaaattacaattttagtcccttaacttaattttaggtaat 24234808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 6489187 - 6489145
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  6489187 aggcaaaattacaattttagtcccttaactttattttaggtaa 6489145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 35521522 - 35521480
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  35521522 aggcaaaattacacttttagtcccttaacttaattttaggtaa 35521480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 17191186 - 17191239
Alignment:
Q  286 ttataaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||||| ||||||    
T  17191186 ttataaaattaaggcaaaattacacttttagtcccttaacttaatttcaggtaa 17191239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 5586803 - 5586760
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  5586803 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 5586760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 27067247 - 27067204
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| | ||||||| |||||||||||||||||||||    
T  27067247 aaggcaaaattatacttttagtcccttaacttaattttaggtaa 27067204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 44344021 - 44344064
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  44344021 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 44344064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 730798 - 730840
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  730798 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 730840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 5618070 - 5618112
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  5618070 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 5618112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 6488870 - 6488912
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  6488870 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 6488912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 8853410 - 8853368
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  8853410 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 8853368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 17504358 - 17504316
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  17504358 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 17504316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 29716469 - 29716427
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  29716469 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 29716427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 34480183 - 34480225
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  34480183 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 34480225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 43726213 - 43726247
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||| ||||||||||||||||||||||    
T  43726213 ggcaaaattacacttttagttccttaacttaattt 43726247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 4695250 - 4695209
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  4695250 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 4695209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 8853096 - 8853137
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  8853096 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 8853137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 25012961 - 25012920
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  25012961 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 25012920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 28554190 - 28554231
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  28554190 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 28554231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 31289254 - 31289295
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  31289254 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 31289295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 39672836 - 39672877
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  39672836 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 39672877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 26095803 - 26095763
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||| ||||||| |||||||||||||| ||||||    
T  26095803 gcaaaattacacttttagtcccttaacttaatttcaggtaa 26095763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 35521222 - 35521266
Alignment:
Q  295 gaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| ||||| |||||||| ||||||||||||| ||||||    
T  35521222 gaaggcaaagttacacttttagtttcttaacttaatttcaggtaa 35521266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 40290134 - 40290086
Alignment:
Q  291 aattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||| ||||||||||||||   ||||| |||||||||||||||||||||    
T  40290134 aatttaaggcaaaattacataattagtcccttaacttaattttaggtaa 40290086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 43497518 - 43497474
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  43497518 aaggcaaaattacaattttaatcccttaacttaattttaggtaat 43497474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 34198827 - 34198876
Alignment:
Q  290 aaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||| |||||||||||||| ||||||||| |||||||||||| ||||||    
T  34198827 aaatttaaggcaaaattacatttttagttctttaacttaatttcaggtaa 34198876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 35560969 - 35560929
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  35560969 gcaaaattacacttttagttctttaacttaattttaggtaa 35560929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 18805748 - 18805787
Alignment:
Q  300 caaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  18805748 caaaattacatttttagttccttaacttaatttcaggtaa 18805787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 26938184 - 26938227
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||    
T  26938184 aaggcaaaattataattttagtcccttaacttaatttcaggtaa 26938227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 26938496 - 26938457
Alignment:
Q  300 caaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  26938496 caaaattacacttttagtcccttaacttaattttaggtaa 26938457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 30463912 - 30463955
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||    
T  30463912 aaggcaaaattacatttttagtcccttaactttattttaggtaa 30463955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 33279254 - 33279211
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  33279254 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 33279211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 39198613 - 39198656
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  39198613 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 39198656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 148292 - 148334
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| |||| || |||||||||||||||||||||    
T  148292 aggcaaaattacacttttggtcccttaacttaattttaggtaa 148334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 8157023 - 8156981
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||| | |||||||||||||||||||||| ||||||    
T  8157023 aggcaaaattatatttttagttccttaacttaatttcaggtaa 8156981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 21660725 - 21660767
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  21660725 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 21660767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 28828530 - 28828488
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||    
T  28828530 ggcaaaattacacttttagtcccttaactttattttaggtaat 28828488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 36556850 - 36556808
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  36556850 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 36556808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 40277543 - 40277501
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||| |||||||  |||||||||||||||||||||    
T  40277543 ggcaaaattacacttttagtcacttaacttaattttaggtaat 40277501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 42684786 - 42684828
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  42684786 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 42684828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 13327262 - 13327303
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  13327262 ggcaaaattacacaattagttccttaacttaattttaggtaa 13327303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 26187442 - 26187401
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||||| | |||||||||||| ||||||    
T  26187442 ggcaaaattacaattttagtccgttaacttaatttcaggtaa 26187401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 27713078 - 27713037
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  27713078 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 27713037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 30253940 - 30253899
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| ||||||||| |||||||||||    
T  30253940 ggcaaaattacacttttagtcccttaactttattttaggtaa 30253899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 34199149 - 34199108
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  34199149 ggcaaaattacactttcagtcccttaacttaattttaggtaa 34199108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 37727502 - 37727461
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||||| |||||| ||||||| ||||||    
T  37727502 ggcaaaattacaattttagtcccttaatttaatttcaggtaa 37727461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 38229923 - 38229886
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttag 335  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  38229923 ggcaaaattacatttttagttctttaacttaattttag 38229886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 10925416 - 10925376
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggta 338  Q
    |||||||||||| ||||||| ||||||||| ||||||||||    
T  10925416 ggcaaaattacacttttagtcccttaactttattttaggta 10925376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 29596403 - 29596443
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||| ||||||| |||||||||||||| ||||||    
T  29596403 gcaaaattacacttttagtcccttaacttaatttcaggtaa 29596443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 1479026 - 1479070
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  1479026 aaggcaaaattacacttttagttccttaacttaatttcaggtaat 1479070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 29154376 - 29154336
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  29154376 gcaaaattacaattttagtcccttaacttaattttaggtaa 29154336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 23926391 - 23926432
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  23926391 ggcaaaattacacttttagttccttaacttaatttcaggtaa 23926432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 44490304 - 44490345
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  44490304 ggcaaaattacacttttagttccttaacttaatttcaggtaa 44490345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 10714329 - 10714281
Alignment:
Q  291 aattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||| |||||||||||||| ||||||| |||||||||||||| ||||||    
T  10714329 aattaaaggcaaaattacacttttagtcccttaacttaatttcaggtaa 10714281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 33274710 - 33274670
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  33274710 gcaaaattacacttttagtcccttaacttaattttaggtaa 33274670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 1650819 - 1650776
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  1650819 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 1650776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 9912229 - 9912186
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||| | |||||||||||||||||||||    
T  9912229 aaggcaaaattacacttttaatcccttaacttaattttaggtaa 9912186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 10192082 - 10192125
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  10192082 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 10192125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 13421393 - 13421350
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||| ||||| ||||||| |||||||||||||||||||||    
T  13421393 aaggcaaagttacacttttagtcccttaacttaattttaggtaa 13421350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 341311 - 341353
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  341311 aggcaaaattacagttttagtcccttaacttaatttcaggtaa 341353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 341627 - 341585
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||| | |||||||||||||||||||||    
T  341627 aggcaaaattacagttttaatcccttaacttaattttaggtaa 341585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 15461578 - 15461528
Alignment:
Q  289 taaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||| || ||||||||||| ||||||| |||||||||||||| ||||||    
T  15461578 taaatttaatgcaaaattacacttttagtcccttaacttaatttcaggtaa 15461528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 22195927 - 22195965
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  22195927 aaaattacagttttagtcccttaacttaattttaggtaa 22195965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 26499421 - 26499463
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  26499421 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 26499463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 29174921 - 29174963
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  29174921 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 29174963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 30488395 - 30488353
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  30488395 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 30488353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 2450088 - 2450129
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||| ||||||| ||||||||||| |||||||||||    
T  2450088 ggcaaaattataattttacttccttaactttattttaggtaa 2450129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 26499725 - 26499684
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  26499725 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 26499684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 35412191 - 35412150
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  35412191 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 35412150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 42030536 - 42030573
Alignment:
Q  295 gaaggcaaaattacaattttagttccttaacttaattt 332  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  42030536 gaaggcaaaattacacttttagtcccttaacttaattt 42030573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 4980639 - 4980675
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  4980639 aaggcaaaattacacttttagtcccttaacttaattt 4980675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 9027084 - 9027120
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaatttt 333  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  9027084 aggcaaaattacacttttagtaccttaacttaatttt 9027120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 28789180 - 28789140
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||| ||||||| |||||||||||||| ||||||    
T  28789180 gcaaaattacacttttagtcccttaacttaatttcaggtaa 28789140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 33274396 - 33274436
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||| ||||||| |||||||||||||| ||||||    
T  33274396 gcaaaattacatttttagtcccttaacttaatttcaggtaa 33274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 9546408 - 9546451
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  9546408 aaggcaaaattacaattttagtcccttaacttaatttcaggtaa 9546451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 32557453 - 32557410
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||| ||||||||||||||||| |||||||||||||||||||||    
T  32557453 aagggaaaattacaattttagtcccttaacttaattttaggtaa 32557410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 13178538 - 13178496
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  13178538 aggcaaaattacagttttagtcccttaacttaattttaggtaa 13178496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 2863580 - 2863621
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  2863580 ggcaaaattacaattttagtcccttaacttaatttcaggtaa 2863621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 2882883 - 2882924
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  2882883 ggcaaaattacaattttagtcccttaacttaatttcaggtaa 2882924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 21926056 - 21926105
Alignment:
Q  290 aaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||| |||||||||||||| ||||||| |||||||||||||| ||||||    
T  21926056 aaattaaaggcaaaattacacttttagtcccttaacttaatttcaggtaa 21926105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 28852188 - 28852229
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  28852188 ggcaaaattacacttttagtcccttaacttaattttaggtaa 28852229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 1925110 - 1925157
Alignment:
Q  292 attgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||| ||||||||||||| ||||||| |||||||||||||| ||||||    
T  1925110 attgtaggcaaaattacacttttagtcccttaacttaatttcaggtaa 1925157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 1925467 - 1925424
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  1925467 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 1925424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 9899193 - 9899236
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  9899193 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 9899236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 2316804 - 2316762
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  2316804 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 2316762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 9899510 - 9899468
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  9899510 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 9899468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 22569074 - 22569036
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  22569074 aaaattacacttttagtcccttaacttaattttaggtaa 22569036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 9546725 - 9546684
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  9546725 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 9546684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 24891625 - 24891662
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttag 335  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  24891625 ggcaaaattacatttttagttccataacttaattttag 24891662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 1137061 - 1137025
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  1137061 aaggcaaaattacaattttagtcccttagcttaattt 1137025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 2467057 - 2467100
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  2467057 aaggcaaaattacatttttagtcccttaacttaattttaggtaa 2467100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 22621060 - 22621098
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  22621060 aaaattacacttttagttccttaacttaattttaggtaa 22621098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 22621361 - 22621319
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  22621361 ggcaaaattacacttttagtcccttaacttaattttaggtaat 22621319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 13455988 - 13455947
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  13455988 ggcaaaattacatttttagtcccttaacttaattttaggtaa 13455947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 19984576 - 19984535
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  19984576 ggcaaaattacatttttagtcccttaacttaattttaggtaa 19984535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 24858403 - 24858444
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  24858403 ggcaaaattacatttttagtcccttaacttaattttaggtaa 24858444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 2467371 - 2467332
Alignment:
Q  300 caaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  2467371 caaaattacatttttagttccttaacttaatttcaggtaa 2467332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 3279504 - 3279461
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  3279504 aaggcaaaattacacttttagtcccttaacttaattttaagtaa 3279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 6541525 - 6541482
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| | |||||||||||||||||||    
T  6541525 aaggcaaaattacacttttagtcctttaacttaattttaggtaa 6541482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 12854892 - 12854849
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| | |||||||||||||||||||||| ||||||    
T  12854892 aaggcaaaattagacttttagttccttaacttaatttcaggtaa 12854849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 16736799 - 16736842
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  16736799 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 16736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 1643538 - 1643580
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  1643538 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 1643580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Original strand, 3168094 - 3168128
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||| ||||||||||||||||||||||    
T  3168094 ggcaaaattacacttttagttccttaacttaattt 3168128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 12875663 - 12875705
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||  |||||| |||||||||||||||||||||    
T  12875663 aggcaaaattacatgtttagtcccttaacttaattttaggtaa 12875705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 16737117 - 16737075
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||| ||||||| |||||||||||||| |||||||    
T  16737117 ggcaaaattacacttttagtcccttaacttaatttcaggtaat 16737075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 40952066 - 40952108
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  40952066 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 40952108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 2426229 - 2426270
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  2426229 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 2426270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 7601907 - 7601866
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  7601907 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 7601866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 14871734 - 14871775
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  14871734 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 14871775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 19131184 - 19131143
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  19131184 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 19131143  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 32994508 - 32994459
Alignment:
Q  290 aaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||| |||||||||||||   ||||| |||||||||||||||||||||    
T  32994508 aaattgtaggcaaaattacacaattagtcccttaacttaattttaggtaa 32994459  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 33429847 - 33429806
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  33429847 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 33429806  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 39589615 - 39589656
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  39589615 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 39589656  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 42611095 - 42611054
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||||| |||||||||||| ||||||    
T  42611095 ggcaaaattacacttttagttctttaacttaatttcaggtaa 42611054  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 13697308 - 13697348
Alignment:
Q  288 ataaattgaaggcaaaattacaattttagttccttaactta 328  Q
    ||||||| |||||||||||||| ||||||||| ||||||||    
T  13697308 ataaattaaaggcaaaattacacttttagttcattaactta 13697348  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 32458143 - 32458091
Alignment:
Q  287 tataaattgaaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||| | ||||||||||||||   ||||| |||||||||||||||||||||    
T  32458143 tataaaattaaggcaaaattacacaattagtcccttaacttaattttaggtaa 32458091  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 37943845 - 37943809
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattt 332  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  37943845 aaggcaaaattacacttttagtcccttaacttaattt 37943809  T

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Target: scaffold0077 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 9921 - 9963
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  9921 ggcaaaattacacttttagtttcttaacttaattttaggtaat 9963  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 18568340 - 18568299
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  18568340 ggcaaaattacacttttagttccttaacttaatttcaggtaa 18568299  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 31857895 - 31857854
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  31857895 ggcaaaattacacttttagttccttaacttaatttcaggtaa 31857854  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 37068685 - 37068726
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  37068685 ggcaaaattacacttttagtcccttaacttaattttaggtaa 37068726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 45656006 - 45655965
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  45656006 ggcaaaattacacttttagtcccttaacttaattttaggtaa 45655965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 49498426 - 49498466
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  49498426 gcaaaattacaattttagctccttgacttaattttaggtaa 49498466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 20984230 - 20984187
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  20984230 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 20984187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 25331813 - 25331856
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||    
T  25331813 aaggcaaaattacacttttagtcccttaacttaatttcaggtaa 25331856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 26842798 - 26842841
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||    
T  26842798 aaggtaaaattacacttttagttccttaacttaatttcaggtaa 26842841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 32488582 - 32488625
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||    
T  32488582 aaggcaaaattacacttttagtcccttaactttattttaggtaa 32488625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 41376583 - 41376626
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||    
T  41376583 aggcaaaattacacttttagtcccttaacttaatttcaggtaat 41376626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 9644755 - 9644793
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  9644755 aaaattacatttttagtcccttaacttaattttaggtaa 9644793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 9902652 - 9902694
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  9902652 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 9902694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 10993624 - 10993666
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  10993624 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 10993666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 16019956 - 16019998
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  16019956 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 16019998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 16530317 - 16530359
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  16530317 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 16530359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 17688023 - 17688061
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  17688023 aaaattacacttttagttccttaacttaatttcaggtaa 17688061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 23963163 - 23963121
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||| |||||||| ||||||| |||||||||||||||||||||    
T  23963163 aggctaaattacacttttagtcccttaacttaattttaggtaa 23963121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 32922382 - 32922340
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  32922382 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 32922340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 41944212 - 41944170
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  41944212 aggcaaaattacatttttagtcccttaacttaatttcaggtaa 41944170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 42009440 - 42009478
Alignment:
Q  301 aaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  42009440 aaaattacaattttaattccttaacttaactttaggtaa 42009478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 52654247 - 52654205
Alignment:
Q  297 aggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||    
T  52654247 aggcaaaattacacttttagtcccttaacttaatttcaggtaa 52654205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 32922067 - 32922108
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  32922067 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 32922108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 38556266 - 38556229
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttag 335  Q
    |||||||||| | |||||||||||||||||||||||||    
T  38556266 ggcaaaattaaagttttagttccttaacttaattttag 38556229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 52538193 - 52538152
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  52538193 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 52538152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 52653931 - 52653972
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    |||||||||||| ||||||| |||||||||||||| ||||||    
T  52653931 ggcaaaattacacttttagtcccttaacttaatttcaggtaa 52653972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 54997169 - 54997128
Alignment:
Q  298 ggcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||||||||  ||||||||||||||| ||||    
T  54997169 ggcaaaattacaattttagtcacttaacttaattttaagtaa 54997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 9645084 - 9645044
Alignment:
Q  299 gcaaaattacaattttagttccttaacttaattttaggtaa 339  Q
    ||||||||||||||||| |  ||||||||||||||||||||    
T  9645084 gcaaaattacaattttactctcttaacttaattttaggtaa 9645044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 16020273 - 16020229
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||| ||||||||| ||||||| |||||||||||||| |||||||    
T  16020273 aaggaaaaattacacttttagtaccttaacttaatttcaggtaat 16020229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 20983912 - 20983956
Alignment:
Q  296 aaggcaaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||||||| |||| || ||||||||| ||||||||||||    
T  20983912 aaggcaaaattacacttttggtcccttaactttattttaggtaat 20983956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 54036866 - 54036906
Alignment:
Q  300 caaaattacaattttagttccttaacttaattttaggtaat 340  Q
    |||||||||| ||||||| |||||||||||||| |||||||    
T  54036866 caaaattacacttttagtcccttaacttaatttcaggtaat 54036906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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