View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20645_low_2 (Length: 763)
Name: NF20645_low_2
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_low_2 |
 | |
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| [»] scaffold0003 (2 HSPs) |
| | |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 200 - 747
Target Start/End: Complemental strand, 5911627 - 5911073
Alignment:
| Q |
200 |
aataattttgcggaatgaaaaacctaagaactatatcacaacccnnnnnnntctcaggatggtttgcgggtgcactgcacaataaagaa-aaggggtgtt |
298 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| || ||||||| |
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| T |
5911627 |
aataattttgcagaatgaaaatcctaagaactatatcagaacccaaaaaa-tctcaggatggtttgcgggtgcactgcataataaagaacaaagggtgtt |
5911529 |
T |
|
| Q |
299 |
aaaaaacaaagccaaatttaaccattttaaactat-------aatgttgacattaatcaaaggaattgaaattgaaatggaaacaacttacgtttgagta |
391 |
Q |
| |
|
||||||||||||||| | | | || ||| ||||| |||||| | |||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5911528 |
aaaaaacaaagccaagtcaaccaatcttatactatctactataatgttaaaattattcaaaggaattgaaattgaaatgggaacaacttacgtttgagta |
5911429 |
T |
|
| Q |
392 |
atcagcagatttgaatttttctactccaccgttaggtcgaacatcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaactactactgcta |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5911428 |
atcagcagatttgaatttttctactccaccgttaggtcgaacgtcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaactactactgcta |
5911329 |
T |
|
| Q |
492 |
gacttcttcttaccaccttttgactccattacttcattcacacacctttctgccaaaagaataaagcagaatgtcaatcacaaaattaagccagtagttg |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5911328 |
gacttcttcttaccaccttttgactccattacttcattcacacacctttctgccaaaagaataaagcagaatgtcaatcacaaaattaagccagtagttg |
5911229 |
T |
|
| Q |
592 |
caaagaaatcatgatttttgggttaattttagtcgtagatactacatgaaaacgctgaggaaaaattggaattgggaatcataaaaacttcaacaagtta |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5911228 |
caaagaaatcatgatttttgggttaattttagtcgtagatactacatgaaaacgctgaggaaaaattggaattgggaatcataaaaacttcaacaagtta |
5911129 |
T |
|
| Q |
692 |
catactgtatctattactatcatccatgttcatagtattctcatttttctgaaata |
747 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
5911128 |
catactgtatctattactatcatccatgttcgtagtattctcatttttctgaaata |
5911073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 197 - 632
Target Start/End: Complemental strand, 5918296 - 5917851
Alignment:
| Q |
197 |
tagaataattttgcggaatgaaaaacctaagaactatatcacaacccnnnnnnntctcaggatggtttgcgggtgcactgcacaataaagaaaag-gggt |
295 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
5918296 |
tagaataattttgcagaatgaaaaacctaagaactatatcaccgcccagaaaa-tctcaggatggtttgcgggtgcactgcataataaagaaaaaagggt |
5918198 |
T |
|
| Q |
296 |
gttaaaaaacaaagccaaatttaaccattttaaactata-------atgttgacattaatcaaaggaattgaaattgaaatggaaac---aacttacgtt |
385 |
Q |
| |
|
|| ||||| ||||||||||| | || ||| |||||| ||||| ||||||||| |||||||| |||||||||| |||| || ||||||| |
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| T |
5918197 |
gtcaaaaagcaaagccaaatcatccaatcttatactatatactataatgttaacattaatcgaaggaattaaaattgaaattgaaatgggaaattacgtt |
5918098 |
T |
|
| Q |
386 |
tgagtaatcagcagatttgaatttttctactccaccgttaggtcgaacatcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaactacta |
485 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5918097 |
tgagtaatcaggtgatttgaatttttctacgccaccgttgggtcgaacgtcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaattacta |
5917998 |
T |
|
| Q |
486 |
ctgctagacttcttcttaccaccttttgactccattacttcattcacacacctttctgccaaaagaataaagcagaatgtcaatcacaaaattaagccag |
585 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| ||||||| |||||||| |
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|
| T |
5917997 |
ctgctagacttctttttaccacctttagactccattagttcattcacacacctttctgccaagagaaagaagcaaaatgtcaaacacaaaaataagccag |
5917898 |
T |
|
| Q |
586 |
tagttgcaaagaaatcatgatttttgggttaattttagtcgtagata |
632 |
Q |
| |
|
|| |||||||||||||||||||| ||| ||| | || |||||||||| |
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|
| T |
5917897 |
taattgcaaagaaatcatgatttctggattactatttgtcgtagata |
5917851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 199 - 559
Target Start/End: Original strand, 5903574 - 5903941
Alignment:
| Q |
199 |
gaataattttgcggaatgaaaaacctaagaactatatcacaacccnnnnnnntctcaggatggtttgcgggtgcactgcacaa---taaag-aaaagggg |
294 |
Q |
| |
|
|||||||||||| |||| | |||||||| |||||||||| ||||| |||||||||||||||||||||||||||| || ||||| |||| ||| |
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| T |
5903574 |
gaataattttgcagaattataaacctaaaaactatatcagaacccagaaaa-tctcaggatggtttgcgggtgcactgcataaaaataaagcaaaaaggg |
5903672 |
T |
|
| Q |
295 |
tgttaaaaaa-caaagccaaatttaaccattttaaactataatgttgacattaatcaaaggaattgaaattgaaatggaaac---aacttacgtttgagt |
390 |
Q |
| |
|
|||||||||| ||||||||||| | || ||| ||||| ||||| | |||||||||||||||| |||| ||||| ||| || |||||||||||| |
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|
| T |
5903673 |
tgttaaaaaaacaaagccaaatcatccaatcttatactatgatgttaaaattaatcaaaggaattaaaatagaaattaaaatgagaaattacgtttgagt |
5903772 |
T |
|
| Q |
391 |
aatcagcagatttgaatttttctactccaccgttaggtcgaacatcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaactactactgct |
490 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5903773 |
aatcagcagatttgaatttttctacgccaccgttgggtcgaacgtcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaactactactgct |
5903872 |
T |
|
| Q |
491 |
agacttcttcttaccaccttttgactccattacttcattcacacacctttctgccaaaagaataaagca |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |
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|
| T |
5903873 |
agacttcttcttaccaccttttgactccattagttcattcacacaactttctgcaaaaagaataaagca |
5903941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 5903408 - 5903501
Alignment:
| Q |
32 |
gttatctcaagcctcttttcatagccttcaaaaccgatagctgagtttgtcatggtcatcttgactcaaaggagaaaataatttttgttgtttg |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5903408 |
gttatctcaagcctcttttcatagccttcaaaaccgatagctgagtttgtcatggtcatcttgactcaaaggagaaaacaatttttgttgtttg |
5903501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 5911795 - 5911706
Alignment:
| Q |
32 |
gttatctcaagcctcttttcatagccttcaaaaccgatagctgagtttgtcatggtcatcttgactcaaaggagaaaataatttttgttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5911795 |
gttatctcaagcctcttttcatagccttcaaaaccgatagctgagtttgtcacggtcatcttgactcaaaggggaaaataatttttgttg |
5911706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 5918429 - 5918336
Alignment:
| Q |
32 |
gttatctcaagcctcttttcatagccttcaaaaccgatagctgagtttgtcatggtcatcttgactcaaaggagaaaataatttttgttgtttg |
125 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |
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|
| T |
5918429 |
gttatctcaagcctcttttcataaccttcaaaaccgatagctgagtttgtcatggtcatcttgactcaaaggggaaaataatttctgtagtttg |
5918336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 169; Significance: 3e-90; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 196 - 595
Target Start/End: Original strand, 363675 - 364079
Alignment:
| Q |
196 |
ctagaataattttgcggaatgaaaaacctaagaactatatcacaacccnnnnnnntctcaggatggtttgcgggtgcactgcacaataaagaaaag-ggg |
294 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
363675 |
ctagaataattttgcagaatgaaaaacctacaaactatatcagaacccagaaaa-tgtcaggatggtttgcgggtgcactgcataataaagaaaaaaggg |
363773 |
T |
|
| Q |
295 |
tgttaaaaaacaaagccaaatttaaccattttaaactataatgttgacattaatcaaaggaattgaaattgaaatggaaac----------aact--tac |
382 |
Q |
| |
|
||||||||||||||||||||| ||||| | | |||||||| |||||||||||||||||||||||||||||| |||| || | ||| |
|
|
| T |
363774 |
tgttaaaaaacaaagccaaatc-aaccaatct----tataatgtagacattaatcaaaggaattgaaattgaaattgaaattgaaatgggaaattattac |
363868 |
T |
|
| Q |
383 |
gtttgagtaatcagcagatttgaatttttctactccaccgttaggtcgaacatcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaacta |
482 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
363869 |
gtttgagtaatcaggtgatttgaatttttctactccaccattaggtcgaacgtcttcaatgatgtaaccgagaggagcttcgtacaaaaaggaggaatta |
363968 |
T |
|
| Q |
483 |
ctactgctagacttcttcttaccaccttttgactccattacttcattcacacacctttctgccaaaagaataaagcagaatgtcaatcacaaaattaagc |
582 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||| || ||| ||||||||||| || ||||| || ||||||| ||||| |
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|
| T |
363969 |
ctactgctagacttcttcttaccacctttagactccattagttcattcacact--ttactggaaaaagaataaatcaaaatgtaaaacacaaaaataagc |
364066 |
T |
|
| Q |
583 |
cagtagttgcaaa |
595 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
364067 |
cggtaattgcaaa |
364079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 363541 - 363634
Alignment:
| Q |
32 |
gttatctcaagcctcttttcatagccttcaaaaccgatagctgagtttgtcatggtcatcttgactcaaaggagaaaataatttttgttgtttg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |
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|
| T |
363541 |
gttatctcaagcctcttttcatagccttcaaaaccgatagctgagtttgtcatggccatcttgaatcaaaggggaaaataatttttgtagtttg |
363634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 694 - 742
Target Start/End: Complemental strand, 39903304 - 39903256
Alignment:
| Q |
694 |
tactgtatctattactatcatccatgttcatagtattctcatttttctg |
742 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
39903304 |
tactgtatctattactatcatccatgttcgtagtattttcatttttctg |
39903256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 531
Target Start/End: Complemental strand, 3863 - 3703
Alignment:
| Q |
377 |
acttacgtttgagtaatcagcagatttgaatttttctactccaccgttaggtcgaacatcttcaatgatgtaaccgagaggagcttcgtacaaaaaggag |
476 |
Q |
| |
|
||||||||| |||||| |||| ||| |||| || | | |||||||||||| |||| ||||||||| |||| ||||| ||||||||||| || || || |
|
|
| T |
3863 |
acttacgttggagtaagcagctgatctgaacttcttgattccaccgttaggacgaatgtcttcaatgctgtatccgaggggagcttcgtagaataatgat |
3764 |
T |
|
| Q |
477 |
ga------actactactgctagacttcttcttaccaccttttgactccattacttcattca |
531 |
Q |
| |
|
|| ||||||||| || |||||||| ||||| ||||| |||||||||| ||||||| |
|
|
| T |
3763 |
gatgatttactactactactggacttctttttacctcctttagactccattagctcattca |
3703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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