View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20645_low_20 (Length: 273)
Name: NF20645_low_20
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 4607312 - 4607065
Alignment:
| Q |
18 |
tttgatacatttcaaaataatcacaagattaaacataaagcaaacgagttaaaacaaaatattttcgatataatgtgcatataattggaaaaataattga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4607312 |
tttgatacatttcaaaataatcacaagattaaacataaagcaaatgagttaaaacaaaatattttcgatataatgtgcatataattggaaaaataattga |
4607213 |
T |
|
| Q |
118 |
aagctttttcacatttttggtttggttctaagtgattcatgatcaaacaatgttacggtggaacaatgctttactttactctgtgtaatgtgcaaatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4607212 |
aagctttttcacatttttggtttggttccaagtgattcatgatcagaaaatgtta-ggtggaacaatgctttacttgactctgtgtaatgtgcaaatttc |
4607114 |
T |
|
| Q |
218 |
atattcaatctatcattcaagaaaaagcggtaaacatgtacctttgctt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4607113 |
atattcaatctatcattcaagaaaaagcggtaaacatgtaccttggctt |
4607065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 7859058 - 7859208
Alignment:
| Q |
106 |
aaaaataattgaaagctttttcacatttttggtttggttctaagtgattcatgatcaaacaatgttacggtggaacaatgctttactttactctgtgtaa |
205 |
Q |
| |
|
||||| |||||||||||| |||||||||| | |||||||||||||||| |||||| | ||||||| |||||||||||| | |||| ||| ||| || |
|
|
| T |
7859058 |
aaaaacaattgaaagcttcctcacatttttt-tgtggttctaagtgattcttgatcatagaatgttattgtggaacaatgcatgacttaactttgt--aa |
7859154 |
T |
|
| Q |
206 |
tgtgcaaatttcatattcaatctatcattcaagaaaaagcggtaaacatgtacc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
7859155 |
tgtgcaaatttcatattcaatctatcattcaagaaaaagaggcaaacatgtacc |
7859208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 14292997 - 14293125
Alignment:
| Q |
132 |
ttttggtttggttctaagtgattcatgatcaaacaatgttacggtggaacaatgctttactttactctgtgtaatgtgcaaatttcatattcaatctatc |
231 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| ||||||| ||||| |||||| | | | | ||||| |||||||||||||||| || ||| |||| |
|
|
| T |
14292997 |
ttttggtttggttctaagtgactcatgctaaaagaatgttattgtggagcaatgcatgaaatgattctgtataatgtgcaaatttcacatgcaaaatatc |
14293096 |
T |
|
| Q |
232 |
attcaagaaaaagcggtaaacatgtacctt |
261 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |
|
|
| T |
14293097 |
attcaag-aaaagcggtaaatatgtacctt |
14293125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 7712853 - 7712900
Alignment:
| Q |
26 |
atttcaaaataatcacaagattaaacataaagcaaacgagttaaaaca |
73 |
Q |
| |
|
|||| |||| |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
7712853 |
attttaaaagaatcgcaagattaaacataaaacaaacgagttaaaaca |
7712900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University