View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20645_low_22 (Length: 263)
Name: NF20645_low_22
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 2056084 - 2056326
Alignment:
| Q |
7 |
gtgagatgaactcataaacatgatgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaacaagatgttttatttatca |
106 |
Q |
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| T |
2056084 |
gtgatatgaactcataaacatgatgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaacaaaatgttttatttatca |
2056183 |
T |
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| Q |
107 |
taaccctccagtttcgagagaaaggttccatagtaattcagagttcagttgagaggtaagtaaagtataaccaagaattgtcccagccatgatttgaact |
206 |
Q |
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| T |
2056184 |
taaccctccagtttggagagaaaggttccatagtaattcagagttcagttgagaggtaagtaaagtataaccaagaattgtcccagccatgatttgaact |
2056283 |
T |
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| Q |
207 |
ggagctctcccaaactattcgtctttaactgagagacaaatgt |
249 |
Q |
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| T |
2056284 |
agagctctcccaaactattcgtctttaactgagagacaaatgt |
2056326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 2052209 - 2052376
Alignment:
| Q |
7 |
gtgagatgaactcataaacatgatgtggtttttatt--tcatccaatggatgaattacaatgtataaacattcacttattgaaca-agatgttttattta |
103 |
Q |
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| T |
2052209 |
gtgatatgaactcataaatatgatgtgtttttttttcttcatgcaatagatgaattacaaggtataaacattcacttattgaacacagatattttattta |
2052308 |
T |
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| Q |
104 |
tcataaccctccagtttcgagagaaaggttcca-tagtaattcagagttcagttgagaggtaagtaaa |
170 |
Q |
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| T |
2052309 |
tcataaccctccagtttcgagagaaaggttccattaataattcagagttcggttggaaggtaagtaaa |
2052376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 2035045 - 2035102
Alignment:
| Q |
30 |
tgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
87 |
Q |
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| T |
2035045 |
tgtggtttctatttcatgctatggatgaattaaaaagtataaacattcacttattgaa |
2035102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 2048356 - 2048404
Alignment:
| Q |
39 |
tatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
87 |
Q |
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| T |
2048356 |
tatttcatgctatggatgaattacaaagtataaacattcacctattgaa |
2048404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 2059355 - 2059399
Alignment:
| Q |
39 |
tatttcatccaatggatgaattacaatgtataaacattcacttat |
83 |
Q |
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| T |
2059355 |
tatttcatgctatggatgaattacaaagtataaacattcacttat |
2059399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 2039142 - 2039200
Alignment:
| Q |
29 |
atgtggtttttatttcatccaatggatgaattacaatgtataaacattcacttattgaa |
87 |
Q |
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| T |
2039142 |
atgtgatttctatttcatgctatggatgaattacaaagcataaacattcacttgttgaa |
2039200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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