View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20645_low_3 (Length: 645)

Name: NF20645_low_3
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20645_low_3
NF20645_low_3
[»] chr4 (1 HSPs)
chr4 (1-627)||(49766195-49766821)
[»] chr2 (1 HSPs)
chr2 (41-167)||(14138362-14138488)


Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 49766195 - 49766821
Alignment:
Q  1 agcaataccattagaattagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766195 agcaataccattagaactagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctt 49766294  T
Q  101 tcaaagaaatcaccagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattaggactgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766295 tcaaagaaatcaccagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattaggactgt 49766394  T
Q  201 tannnnnnnnnnnnnnnnnaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtatt 300  Q
    ||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766395 tatcttcttcttcttcttcaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtatt 49766494  T
Q  301 actaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766495 actaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatca 49766594  T
Q  401 accatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgtcgtagcagatgcagaaacagaggttttcttct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49766595 accatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgacgtagcagatgcagaaacagaggttttcttct 49766694  T
Q  501 tctttctcttagctaagagaaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccatgattttcatttttagtaggacaaacaga 600  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766695 tctttttcttagctaagagaaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccatgattttcatttttagtaggacaaacaga 49766794  T
Q  601 gagtgagagagaagaagatgaagttac 627  Q
    |||||||||||||||||||||||||||    
T  49766795 gagtgagagagaagaagatgaagttac 49766821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 14138488 - 14138362
Alignment:
Q  41 ccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctttcaaagaaatcaccagagaagcttctgctaccacatccaa 140  Q
    ||||||||||||||||| |||||||| |  ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  14138488 ccttcacgttgagattccactcttcttaaggtacaatctccaaacccagttgagattttctcaaagaaatcaccagagaagcttctgctaccacatccaa 14138389  T
Q  141 cagatctagatcttgaaactttacgtt 167  Q
    ||||||||||||||||||| |||||||    
T  14138388 cagatctagatcttgaaaccttacgtt 14138362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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