View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20645_low_4 (Length: 632)
Name: NF20645_low_4
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 32680061 - 32680435
Alignment:
| Q |
9 |
agcacagagggctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgtggatcgaggaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680061 |
agcacagagggctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgtggatcgaggaaaa |
32680160 |
T |
|
| Q |
109 |
ctctgattgactcatttgtctcttattaaaaggatcagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaatttt |
208 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680161 |
ctctgattgactcatttgtctcctattaaaaggattagagggagtatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaatttt |
32680260 |
T |
|
| Q |
209 |
caccttgttcggtaataaggatttctcttcagctgccctttcaagtgcagttgtcgctgaactgagtagagaattaagaaagctcaacgaaggttgttga |
308 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32680261 |
caccttgttcagtaataaggatttctcttcagctgccctttcaagtgcagttgtcgctgaactgagtagagaattaagaaagcacaacgaaggttgttga |
32680360 |
T |
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| Q |
309 |
aattcaacggaagtagggtaactgggggaggcatcagaagactgagattacatttgataaggaaaatattagttt |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32680361 |
aattcaacggaagtagggtaactgggggaggcatcagaagactgagattacattttataaggaaaatattagttt |
32680435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 506 - 616
Target Start/End: Original strand, 32680984 - 32681098
Alignment:
| Q |
506 |
ataatgaaaaggataacaataggacatggtaata----gatagaaaagaaaatttcgatggcaacacaaaacatcatcgaataagctacatagaactatt |
601 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680984 |
ataatgaaaaggataacaataggacatggtaatatatagatagaaaagaaaatttcaatggcaacacaaaacatcatcgaataagctacatagaactatt |
32681083 |
T |
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| Q |
602 |
tgtgcttatactttt |
616 |
Q |
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||||||||||||||| |
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| T |
32681084 |
tgtgcttatactttt |
32681098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 457 - 507
Target Start/End: Original strand, 32680703 - 32680753
Alignment:
| Q |
457 |
tcaacataagactgcttcatacatgtcaaggctcaacataattcatagcat |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32680703 |
tcaacataagactgcttcatacatgtcaaggctcaacataattcatagcat |
32680753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 153 - 383
Target Start/End: Original strand, 40116880 - 40117110
Alignment:
| Q |
153 |
tatctgacaatgtaaaccaaagcactacaaagacagacaaattagttttcaattttcaccttgttcggtaataaggatttctcttcagctgccctttcaa |
252 |
Q |
| |
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|||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| | |
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| T |
40116880 |
tatcagacaatgtaaaccaaagcactagaaagacgaacaaatcagttttcaattttcaccttgttcagtaataaggatttctcctcggctgctctttcca |
40116979 |
T |
|
| Q |
253 |
gtgcagttgtcgctgaactgagtagagaattaagaaagctcaacgaaggttgttgaaattcaacggaagtagggtaactgggggaggcatcagaagactg |
352 |
Q |
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|||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |
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| T |
40116980 |
gtgcagttgtagctgaactgagtaaagaattaagcaagctcaatgaaggttgttgaaattcaacagaagtagggtaactggaggaggcatcggaagactg |
40117079 |
T |
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| Q |
353 |
agattacatttgataaggaaaatattagttt |
383 |
Q |
| |
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|||| ||||| | ||| ||||||||||||| |
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| T |
40117080 |
agatatcattttacaagaaaaatattagttt |
40117110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 44806454 - 44806374
Alignment:
| Q |
19 |
gctacaataaaaagtcttaatattttggtataaattcccttgattgagaagctttcaaaacctatgttgtcaatcgtggat |
99 |
Q |
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||||||| |||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
44806454 |
gctacaaggaaaagtcttaatgatttcgtataaattcccttaattcagaagctttcaaaacctatgttgtcaatagtggat |
44806374 |
T |
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