View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20645_low_7 (Length: 572)
Name: NF20645_low_7
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20645_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 561
Target Start/End: Original strand, 43777650 - 43778195
Alignment:
| Q |
19 |
gatctcctcattcatgcttctctcccaactgggctgctcaaccttcttagaagtaacgctatcaggaccttcttccttagggattagctagcttatgtta |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43777650 |
gatctcctcattcatgcttctttcccaactgggctgctcaaccttcttagaagtaacgctatcaggaccttcttccttagggattagctagcttatgtta |
43777749 |
T |
|
| Q |
119 |
ggctttttcttttctctttcctgnnnnnnnnccttgttgtctcattcacctttgtaaccaaaaagagtgtcgcgtttttaccgacgtgtcaatactggct |
218 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43777750 |
ggctttttcttttctttttcctgttttttttccttgttgtctcattctcctttgtaaccaaaaagagtgtcgcgtttttaccgacgtgtcaatactggct |
43777849 |
T |
|
| Q |
219 |
ggatcttagcgttgatgactcgtgtaatttggcacttcatggatcagataaatcatgtaaatgattgaaatgcccttctttttccaattgaaggtttata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43777850 |
ggatcttagcgttgatgactcgtgtaatttggcacttcatggatcagataaatcatgtaaatgattgaaatgcccttctttttccaattgaaggtttata |
43777949 |
T |
|
| Q |
319 |
accaggagcaaca--ttgctcaatgaacaaggttgagttttgggtttcttaaagctgcaattgtggaagcaaacatcatacttggtttgaatatgtacac |
416 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43777950 |
accatgagcaacaccttgctcaatgaacaaggttgagatttgggtttcttaaagctgcaattgtggaagcaaacatcatacttggtttgaatatgtacac |
43778049 |
T |
|
| Q |
417 |
tattcgaaaaatcttgctcaaacttgtgttcctccttctctttttgatcgcatgccttgtcctctcaatccc-nnnnnnnncttcatgttcatcatttat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43778050 |
tattcgaaaaatcttgctcaaacttgtgttcctccttctctttttgatcgcatgccttgtcctctcaatccctttttttttcttcatgttcatcatttat |
43778149 |
T |
|
| Q |
516 |
cttacaggactannnnnnngtacaagggacttttccatagattcat |
561 |
Q |
| |
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|| ||||||||| |||||||||||||||||||| |||||| |
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| T |
43778150 |
ctcacaggactatttttttgtacaagggacttttccatacattcat |
43778195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 5941909 - 5941999
Alignment:
| Q |
41 |
tcccaactgggctgctcaaccttcttagaagtaacgctatcaggaccttcttccttagggattagctagcttatgttaggctttttctttt |
131 |
Q |
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||||||||| ||||||||||||||||| |||| | |||| | ||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
5941909 |
tcccaactgagctgctcaaccttcttaaaagtgatgctaatggaaccttcttccttagggattagctaggttttgttaggctttttctttt |
5941999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 6313452 - 6313564
Alignment:
| Q |
19 |
gatctcctcattcatgcttctctcccaactgggctgctcaaccttcttagaagtaacgctatcaggaccttcttccttagggattagctagcttatgtta |
118 |
Q |
| |
|
|||||| ||||||| |||| | |||| ||| ||| ||||||||||||||||| || ||| | |||||||| |||||| ||||||||| || ||||| |
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| T |
6313452 |
gatctcgtcattcacgctttacccccatctgagctactcaaccttcttagaagcgacactaatggaaccttctttcttaggtattagctaggttctgtta |
6313551 |
T |
|
| Q |
119 |
ggctttttctttt |
131 |
Q |
| |
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| ||||||||||| |
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| T |
6313552 |
gcctttttctttt |
6313564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 3805672 - 3805592
Alignment:
| Q |
51 |
gctgctcaaccttcttagaagtaacgctatcaggaccttcttccttagggattagctagcttatgttaggctttttctttt |
131 |
Q |
| |
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|||||||| ||||||||||||| |||||| | ||||||||| | || |||||||||| ||||||||| ||||||||||| |
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| T |
3805672 |
gctgctcagccttcttagaagtgacgctaatggaaccttcttcttaagagattagctaggttatgttagcctttttctttt |
3805592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 36513674 - 36513565
Alignment:
| Q |
19 |
gatctcctcattcatgcttctctcccaactgggctgctcaaccttcttagaagtaacgctatcaggaccttcttccttagggattagctagcttatgtta |
118 |
Q |
| |
|
|||||||||||||| ||||||| || | |||||||||||||| || |||||| | |||||| | |||| || |||| ||||||||||||| ||||| |
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| T |
36513674 |
gatctcctcattcacgcttctcccctagctgggctgctcaactttattagaa-tgacgctaatggaacctcttt--ttagagattagctagcttttgtta |
36513578 |
T |
|
| Q |
119 |
ggctttttctttt |
131 |
Q |
| |
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||||||||||||| |
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| T |
36513577 |
ggctttttctttt |
36513565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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