View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20645_low_9 (Length: 424)

Name: NF20645_low_9
Description: NF20645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20645_low_9
NF20645_low_9
[»] chr2 (8 HSPs)
chr2 (154-325)||(37642282-37642451)
chr2 (40-151)||(8985574-8985685)
chr2 (50-151)||(32291155-32291256)
chr2 (40-151)||(8986927-8987038)
chr2 (79-138)||(32276952-32277011)
chr2 (28-151)||(38583480-38583602)
chr2 (38-108)||(38588196-38588266)
chr2 (51-151)||(1172776-1172875)
[»] chr3 (12 HSPs)
chr3 (45-151)||(46691454-46691559)
chr3 (28-151)||(814375-814498)
chr3 (44-151)||(42531289-42531396)
chr3 (46-151)||(50297460-50297565)
chr3 (40-145)||(30057091-30057196)
chr3 (38-150)||(16462968-16463079)
chr3 (44-151)||(42530590-42530695)
chr3 (45-151)||(50294658-50294762)
chr3 (59-151)||(814260-814351)
chr3 (51-145)||(18088145-18088238)
chr3 (45-106)||(46694050-46694111)
chr3 (46-99)||(29556795-29556847)
[»] chr7 (13 HSPs)
chr7 (40-151)||(15614250-15614361)
chr7 (40-151)||(2628243-2628354)
chr7 (40-151)||(46963064-46963175)
chr7 (40-130)||(6840606-6840696)
chr7 (40-152)||(46964418-46964530)
chr7 (38-150)||(21814428-21814539)
chr7 (50-151)||(44339050-44339151)
chr7 (40-105)||(26403493-26403558)
chr7 (50-113)||(44337385-44337448)
chr7 (40-114)||(26402359-26402433)
chr7 (75-151)||(6841471-6841547)
chr7 (97-145)||(17921256-17921304)
chr7 (82-114)||(21811705-21811737)
[»] chr1 (10 HSPs)
chr1 (40-151)||(15629347-15629458)
chr1 (40-151)||(15630146-15630257)
chr1 (40-151)||(6696015-6696126)
chr1 (40-114)||(28665017-28665090)
chr1 (37-151)||(2073362-2073479)
chr1 (37-151)||(2076894-2077011)
chr1 (37-78)||(2070734-2070775)
chr1 (72-151)||(2071561-2071641)
chr1 (80-151)||(2075099-2075171)
chr1 (43-99)||(3774327-3774382)
[»] chr4 (10 HSPs)
chr4 (40-151)||(16871651-16871762)
chr4 (40-154)||(16543357-16543471)
chr4 (46-114)||(37945521-37945589)
chr4 (56-144)||(16869513-16869601)
chr4 (46-102)||(24131825-24131881)
chr4 (40-114)||(54146651-54146724)
chr4 (31-103)||(52849337-52849409)
chr4 (40-113)||(54148313-54148384)
chr4 (40-115)||(14458575-14458650)
chr4 (27-78)||(24226122-24226171)
[»] chr6 (14 HSPs)
chr6 (40-150)||(33423977-33424087)
chr6 (40-113)||(22868499-22868572)
chr6 (47-114)||(9290661-9290728)
chr6 (44-151)||(21862689-21862796)
chr6 (50-151)||(18984497-18984598)
chr6 (44-151)||(10741772-10741878)
chr6 (40-111)||(18792843-18792914)
chr6 (40-152)||(10740573-10740682)
chr6 (44-152)||(13166434-13166541)
chr6 (40-99)||(28064663-28064723)
chr6 (40-99)||(28063008-28063066)
chr6 (97-148)||(236581-236632)
chr6 (40-99)||(9365107-9365165)
chr6 (40-90)||(2979649-2979698)
[»] chr5 (5 HSPs)
chr5 (44-143)||(24137606-24137705)
chr5 (51-151)||(11320486-11320585)
chr5 (40-145)||(11343924-11344028)
chr5 (41-112)||(6643402-6643473)
chr5 (37-110)||(9512489-9512562)
[»] scaffold0511 (1 HSPs)
scaffold0511 (40-111)||(11227-11298)
[»] scaffold0002 (1 HSPs)
scaffold0002 (40-151)||(406245-406356)
[»] chr8 (11 HSPs)
chr8 (50-151)||(20242727-20242828)
chr8 (50-151)||(20250332-20250433)
chr8 (64-151)||(43615458-43615545)
chr8 (45-145)||(33199415-33199516)
chr8 (50-113)||(20241063-20241126)
chr8 (50-113)||(20251941-20252004)
chr8 (40-111)||(44374651-44374722)
chr8 (51-151)||(43414101-43414199)
chr8 (42-99)||(43516178-43516234)
chr8 (40-145)||(20093300-20093403)
chr8 (49-114)||(16578791-16578856)
[»] scaffold0325 (1 HSPs)
scaffold0325 (40-151)||(14526-14638)
[»] scaffold0007 (1 HSPs)
scaffold0007 (77-151)||(14290-14364)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 154 - 325
Target Start/End: Original strand, 37642282 - 37642451
Alignment:
Q  154 acctacccatacattttaatgggtttacaaaccattccatagatatccctttaccagagacttgtattgagttttcttcatcaaacaatactagtctttt 253  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||  |||| |||||||||||    
T  37642282 acctacccatacattttaatgggtttacaaaccattccatggatatcccttcacaagagacttgtattgagttttcttcatc--acaacactagtctttt 37642379  T
Q  254 agatgaattagggttcgagtagaagtttgttttgagagtttgtaatttttctgtgcaaacattgtaattgag 325  Q
    || |||||||||||||||||||  || |||||||| |||||||||||||||  |||||||||||||||||||    
T  37642380 aggtgaattagggttcgagtagttgtgtgttttgaaagtttgtaatttttccatgcaaacattgtaattgag 37642451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 8985685 - 8985574
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  |||| |||||||||   |||||||    
T  8985685 aatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatgtccaataacttaagcctaatactt 8985586  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  8985585 tattatctaaca 8985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 32291256 - 32291155
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaa 149  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||| |||    
T  32291256 cattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatataaagacacaataacttaagctcaatactttattatctaa 32291157  T
Q  150 ca 151  Q
    ||    
T  32291156 ca 32291155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 8987038 - 8986927
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||   ||| |||||||||   |||||||    
T  8987038 aatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatgcccaataacttaagcctaatactt 8986939  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  8986938 tattatctaaca 8986927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 32277011 - 32276952
Alignment:
Q  79 ataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatact 138  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  32277011 ataaaacctaatggactctaacttactaatataaaggtccaataacttaagctcaatact 32276952  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 38583480 - 38583602
Alignment:
Q  28 atagaataccaaaatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaactta 127  Q
    ||||||||| ||||||  || |||||||||||||||||||| ||||||||||||||| |||| ||  ||||||||||||||||||||  ||| ||| |||    
T  38583480 atagaatac-aaaataaattgacattacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatataaaggcccaataattta 38583578  T
Q  128 agttcaatactttattatttaaca 151  Q
    ||   |||| |||||||| |||||    
T  38583579 agcctaatattttattatctaaca 38583602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 38588196 - 38588266
Alignment:
Q  38 aaaatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaat 108  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||||||||   ||||||||||| ||||    
T  38588196 aaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacctactctaacttattaat 38588266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 1172776 - 1172875
Alignment:
Q  51 attacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaac 150  Q
    |||| |||| ||||| |||||||||||||| ||| | |||||||||||| ||| |||||| |||  | | ||  |||||| |||||||||||||| ||||    
T  1172776 attataaaatgttatgagagaatatataat-aaatcgaatggactctaatttattaatattaaggcctaatagtttaagtacaatactttattatctaac 1172874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 46691454 - 46691559
Alignment:
Q  45 cttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatta 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  46691454 cttaacattacaaaaggttataagagaatatataataaaac-taatggactctaacttactagtataaaggtccaataacttaagttcaatactttatta 46691552  T
Q  145 tttaaca 151  Q
    | |||||    
T  46691553 tctaaca 46691559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 814375 - 814498
Alignment:
Q  28 atagaataccaaaatagcttaacattacaaaaggttataagagaatatataata--aaacctaatggactctaacttactaatataaagatccagtaact 125  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||||||||  |  ||||||||||||||||||||||||||||||||   ||| |||||    
T  814375 atagaataccaa--tagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttactaatataaatgcccaataact 814472  T
Q  126 taagttcaatactttattatttaaca 151  Q
    ||||| |||||||||||||| |||||    
T  814473 taagtccaatactttattatctaaca 814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 42531396 - 42531289
Alignment:
Q  44 gcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||  |||| ||||| |||  |||| |||||||    
T  42531396 gcttaacattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaaagtccaataactcaagcccaatcctttatt 42531297  T
Q  144 atttaaca 151  Q
    || |||||    
T  42531296 atctaaca 42531289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 50297565 - 50297460
Alignment:
Q  46 ttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattat 145  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||||  || |||||||||  ||||||||||||||    
T  50297565 ttaacattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatataaagactcaataacttaagcacaatactttattat 50297466  T
Q  146 ttaaca 151  Q
     |||||    
T  50297465 ctaaca 50297460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 30057196 - 30057091
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||  ||||||||   ||| |||||| |||| |||||||    
T  30057196 aatagcttaacattacaaaagattataagagaatatataacaaaatctaatggactctaacttatgaatataaatgcccaataacttgagtttaatactt 30057097  T
Q  140 tattat 145  Q
    ||||||    
T  30057096 tattat 30057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 16463079 - 16462968
Alignment:
Q  38 aaaatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatac 137  Q
    ||||||| |||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    | || |||||| |||||||    
T  16463079 aaaatagattaacattacaaaagaatattagagaatatataataaa-cctaatggactctaacttactaatataaaggcttaatatcttaagctcaatac 16462981  T
Q  138 tttattatttaac 150  Q
    |||||||| ||||    
T  16462980 tttattatctaac 16462968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 42530695 - 42530590
Alignment:
Q  44 gcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatt 143  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |  || ||||| |||| ||||||||||||    
T  42530695 gcttaacattacaaa-ggttataagagaatatataataaaacctaatgaactttaatttactaatataaa-agtcactaactcaagtccaatactttatt 42530598  T
Q  144 atttaaca 151  Q
    || |||||    
T  42530597 atctaaca 42530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 50294762 - 50294658
Alignment:
Q  45 cttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatta 144  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | || |||||||||  ||||||||||| |    
T  50294762 cttaatattacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaaggt-caataacttaag-ccaatactttatca 50294665  T
Q  145 tttaaca 151  Q
    | |||||    
T  50294664 tctaaca 50294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 814351 - 814260
Alignment:
Q  59 aggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaaca 151  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||   ||| |||||||||| |||||||||||||| |||||    
T  814351 aggttataagagaatata-aacgaaacctaatggactctaacttactaatataaatgcccaataacttaagtccaatactttattatctaaca 814260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 18088145 - 18088238
Alignment:
Q  51 attacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattat 145  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  | | || ||||||  ||||||||||||||    
T  18088145 attacaaaatgttatgagagaatatataataaa-cctaatggactctaacttactaatataaaggcctaatagcttaagcccaatactttattat 18088238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 46694050 - 46694111
Alignment:
Q  45 cttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttacta 106  Q
    |||||| ||| ||||| ||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  46694050 cttaactttagaaaagattatatgagaatatataataaaacataatgaactctaagttacta 46694111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 29556847 - 29556795
Alignment:
Q  46 ttaacattacaaaaggttataagagaatatataataaaacctaatggactctaa 99  Q
    |||||||||||||||| ||||| |||||||| |||||||||| ||||| |||||    
T  29556847 ttaacattacaaaagggtataaaagaatata-aataaaaccttatggattctaa 29556795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 15614250 - 15614361
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||  ||||||||    
T  15614250 aatagcttaatattacaaaaggttataaaagaatatataataaaacctaatggactctaacttgctaatataaaggtccaataacttaagcccaatactt 15614349  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  15614350 tattatctaaca 15614361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 2628243 - 2628354
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| |||||||||    
T  2628243 aatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatataaagactcaataacttaagctcaatactt 2628342  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  2628343 tattatctaaca 2628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 46963064 - 46963175
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||   ||| |||||||||   |||||||    
T  46963064 aatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactt 46963163  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  46963164 tattatctaaca 46963175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 6840606 - 6840696
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagt 130  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||  ||| ||||||||||    
T  6840606 aatagctttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactgatataaaggcccaataacttaagt 6840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 46964418 - 46964530
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||   ||| |||||||||   ||| |||    
T  46964418 aatagcttaatattacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatgcccaataacttaagcctaatcctt 46964517  T
Q  140 tattatttaacag 152  Q
    |||||| ||||||    
T  46964518 tattatctaacag 46964530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 21814539 - 21814428
Alignment:
Q  38 aaaatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatac 137  Q
    ||||||| |||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    | || |||||| |||||||    
T  21814539 aaaatagattaacattacaaaagaatattagagaatatataataaa-cctaatggactctaacttactaatataaaggcttaatatcttaagctcaatac 21814441  T
Q  138 tttattatttaac 150  Q
    |||||||| ||||    
T  21814440 tttattatctaac 21814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 44339151 - 44339050
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaa 149  Q
    |||||| ||| ||||||| ||||||||||||||||  |||  |||| |||||||||||||||||| |||| |||||||| | ||||| ||||||||||||    
T  44339151 cattactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaa 44339052  T
Q  150 ca 151  Q
    ||    
T  44339051 ca 44339050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 26403558 - 26403493
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttact 105  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| ||||| | ||||||||||||    
T  26403558 aatagcataacattacaaaaagttataagagaatatataataaaatctaatcggctctaacttact 26403493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 44337448 - 44337385
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaa 113  Q
    |||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  44337448 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 44337385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 26402433 - 26402359
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaag 114  Q
    |||||| ||||||||||||| |||| || ||||||||||||||||  ||||  |||||||||| |||||||||||    
T  26402433 aatagcataacattacaaaaagttacaaaagaatatataataaaatttaataaactctaacttgctaatataaag 26402359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 6841471 - 6841547
Alignment:
Q  75 tataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaaca 151  Q
    |||||||||| |||| ||||||||||||||| ||||||||  ||| |||||||||| | ||| |||||||| |||||    
T  6841471 tataataaaatctaacggactctaacttactgatataaaggcccaataacttaagtccgatattttattatctaaca 6841547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 17921256 - 17921304
Alignment:
Q  97 taacttactaatataaagatccagtaacttaagttcaatactttattat 145  Q
    |||||||||||||||||||  || ||||||||||  |||||||||||||    
T  17921256 taacttactaatataaagacacaataacttaagtctaatactttattat 17921304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 21811737 - 21811705
Alignment:
Q  82 aaacctaatggactctaacttactaatataaag 114  Q
    ||||||||| |||||||||||||||||||||||    
T  21811737 aaacctaattgactctaacttactaatataaag 21811705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 15629347 - 15629458
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |||||||||  ||||| ||    
T  15629347 aatagcttaatattacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatataaaggtccaataacttaagcccaatattt 15629446  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  15629447 tattatctaaca 15629458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 15630146 - 15630257
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||| ||||| |||||||||    
T  15630146 aataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatataaaggcccaataatttaagctcaatactt 15630245  T
Q  140 tattatttaaca 151  Q
    ||||||||||||    
T  15630246 tattatttaaca 15630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 6696126 - 6696015
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||   ||| |||||||||   |||||||    
T  6696126 aatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactt 6696027  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  6696026 tattatctaaca 6696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 28665090 - 28665017
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaag 114  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28665090 aatagcttaatattacaaaatgttatgagagaatatataataaa-cctaatggactctaacttactaatataaag 28665017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 2073362 - 2073479
Alignment:
Q  37 caaaatagcttaacattacaaaaggttataagaga--atatataataaaacctaatggact-ctaacttactaatataaagatccagtaacttaagttca 133  Q
    ||||||||| || |||||||||| |||||||||||  ||||||| |||||||||||||||| ||||||||||||||| |||  | | || ||||||  ||    
T  2073362 caaaatagcatagcattacaaaaagttataagagaatatatatactaaaacctaatggactgctaacttactaatattaaggactaatagcttaagccca 2073461  T
Q  134 atactttattatttaaca 151  Q
    ||| |||||||| |||||    
T  2073462 atattttattatctaaca 2073479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 2076894 - 2077011
Alignment:
Q  37 caaaatagcttaacattacaaaaggttataagaga--atatataataaaacctaatggact-ctaacttactaatataaagatccagtaacttaagttca 133  Q
    ||||||||| || |||||||||| |||||||||||  ||||||| |||||||||||||||| ||||||||||||||| |||  | | || ||||||  ||    
T  2076894 caaaatagcatagcattacaaaaagttataagagaatatatatactaaaacctaatggactgctaacttactaatattaaggactaatagcttaagccca 2076993  T
Q  134 atactttattatttaaca 151  Q
    ||| |||||||| |||||    
T  2076994 atattttattatctaaca 2077011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 2070734 - 2070775
Alignment:
Q  37 caaaatagcttaacattacaaaaggttataagagaatatata 78  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  2070734 caaaatagcataacattacaaaaagttataagagaatatata 2070775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 2071561 - 2071641
Alignment:
Q  72 atatataataaaacctaatggact-ctaacttactaatataaagatccagtaacttaagttcaatactttattatttaaca 151  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||  ||| || ||||||  ||||| |||||||| |||||    
T  2071561 atatatactaaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaaca 2071641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 2075099 - 2075171
Alignment:
Q  80 taaaacctaatggact-ctaacttactaatataaagatccagtaacttaagttcaatactttattatttaaca 151  Q
    |||||||||||||||| ||||||||||||||| |||  ||| || ||||||  ||||| |||||||| |||||    
T  2075099 taaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaaca 2075171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 3774327 - 3774382
Alignment:
Q  43 agcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaa 99  Q
    ||||||||||||||||||  ||  ||||||||||| ||||||||||||||| |||||    
T  3774327 agcttaacattacaaaagaataatagagaatatat-ataaaacctaatggattctaa 3774382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 16871762 - 16871651
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||   ||| |||||||||   |||||||    
T  16871762 aatagcttaacattacaaaaggttataagataatatataataaaatctaatggactctaacttactaatataaatgcccaataacttaagcctaatactt 16871663  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  16871662 tattatctaaca 16871651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 16543471 - 16543357
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||| ||||||||| |||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||   ||| |||||||||| || |||||    
T  16543471 aataccttaacattgcaaaaggttacatgagaatatataataaaacttaatgaactctaacttactaatataaaaggccaataacttaagtccattactt 16543372  T
Q  140 tattatttaacagta 154  Q
    |||||| ||||||||    
T  16543371 tattatctaacagta 16543357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 37945589 - 37945521
Alignment:
Q  46 ttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaag 114  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  37945589 ttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaag 37945521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 16869601 - 16869513
Alignment:
Q  56 aaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatta 144  Q
    |||| ||||||||||| |||||||||||| |||||| |||||||||||||||||||||   ||| ||||||||| ||||||||||||||    
T  16869601 aaaaagttataagagagtatataataaaatctaatgaactctaacttactaatataaaagcccaataacttaagctcaatactttatta 16869513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 24131881 - 24131825
Alignment:
Q  46 ttaacattacaaaaggttataagagaatatataataaaacctaatggactctaactt 102  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  24131881 ttaacattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 54146724 - 54146651
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaag 114  Q
    |||||||||| ||||||||| ||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  54146724 aatagcttaatattacaaaatgttatgagagaatatatgataaatc-taatggactctaacttactaatataaag 54146651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 52849337 - 52849409
Alignment:
Q  31 gaataccaaaatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaactta 103  Q
    |||||| ||||||| | || ||||||||||| ||   |||||||||||||||||| |||||||||||||||||    
T  52849337 gaatacaaaaatagataaatattacaaaaggatactcgagaatatataataaaacttaatggactctaactta 52849409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 54148384 - 54148313
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaa 113  Q
    |||||||||| | |||||| | |||| ||||||||||||||||| | || ||||||||||||||||||||||||    
T  54148384 aatagcttaataatacaaatg-ttatgagagaatatataataaatc-tattggactctaacttactaatataaa 54148313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 14458650 - 14458575
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggact-ctaacttactaatataaaga 115  Q
    |||| ||||| || ||||||||||| |||||||| ||| |||||||||||| |||| |||||||| |||||||||||    
T  14458650 aataacttaatatcacaaaaggttacaagagaatgtat-ataaaacctaatagactactaacttagtaatataaaga 14458575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 24226171 - 24226122
Alignment:
Q  27 tatagaataccaaaatagcttaacattacaaaaggttataagagaatatata 78  Q
    |||||||||||||  ||| |||||||||||||||||||| ||||||||||||    
T  24226171 tatagaataccaa--tagtttaacattacaaaaggttattagagaatatata 24226122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 33423977 - 33424087
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    ||||||| ||||||||||| ||||||  |||||||||||||||||||||||| ||| |||||||||||||||||||  || ||||||||| |||||||||    
T  33423977 aatagctcaacattacaaagggttatgggagaatatataataaaacctaatgaactttaacttactaatataaagacgcaataacttaagctcaatactt 33424076  T
Q  140 tattatttaac 150  Q
    |||||| ||||    
T  33424077 tattatctaac 33424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 22868572 - 22868499
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaa 113  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22868572 aatagcataacattacaaaaagttataagagaatatataataaaacctaatggactctaacttactaatataaa 22868499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 9290661 - 9290728
Alignment:
Q  47 taacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9290661 taacattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaag 9290728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 21862796 - 21862689
Alignment:
Q  44 gcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatt 143  Q
    |||||| ||||||||  ||||  ||||||||||||||||||||||||| |||||||||| |||||||||||| ||| || |||||| |||||||||||||    
T  21862796 gcttaatattacaaagagttactagagaatatataataaaacctaatgcactctaacttgctaatataaagacccaatagcttaagctcaatactttatt 21862697  T
Q  144 atttaaca 151  Q
    || |||||    
T  21862696 atctaaca 21862689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 18984598 - 18984497
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaa 149  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||| |||  ||||  ||||| ||||||||||||    
T  18984598 cattactaaaggttataagagaatatataataaaacataatgtactctaacttactaatataaaggcccaataatctaagcccaatattttattatttaa 18984499  T
Q  150 ca 151  Q
    ||    
T  18984498 ca 18984497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 10741878 - 10741772
Alignment:
Q  44 gcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatt 143  Q
    |||||| ||||||||| ||||| ||||||||||||||||| | |||||||||||||||| |||||||||||| ||| |||||||||  ||||| ||||||    
T  10741878 gcttaatattacaaaatgttatgagagaatatataataaatc-taatggactctaactttctaatataaagacccaataacttaagcccaatattttatt 10741780  T
Q  144 atttaaca 151  Q
    || |||||    
T  10741779 atctaaca 10741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 18792843 - 18792914
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatata 111  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||    
T  18792843 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 18792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 10740682 - 10740573
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||| ||||| ||||||||| ||||| |||||||||||||| |||| ||||||||||||| || ||||||||||||  || |||||||||  ||||| ||    
T  10740682 aataacttaatattacaaaatgttatgagagaatatataat-aaacgtaatggactctaatttgctaatataaaga--caataacttaagcccaatattt 10740586  T
Q  140 tattatttaacag 152  Q
    |||||| ||||||    
T  10740585 tattatctaacag 10740573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 13166541 - 13166434
Alignment:
Q  44 gcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatt 143  Q
    ||||||||||| |||||||||| |||||||||||||||| || ||||| ||||||||||  |||||||| || ||   ||||||||  ||| ||||||||    
T  13166541 gcttaacatta-aaaaggttatgagagaatatataataacacttaatgaactctaacttgttaatataaggacccgccaacttaagcccaaaactttatt 13166443  T
Q  144 atttaacag 152  Q
    || ||||||    
T  13166442 atctaacag 13166434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 28064663 - 28064723
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatata-ataaaacctaatggactctaa 99  Q
    |||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||||    
T  28064663 aatagcttaacattacaaaaggttactagagaatataaatataaaacctaatggactctaa 28064723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 28063008 - 28063066
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaa 99  Q
    |||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||    
T  28063008 aatagcttaacattacaaaaggttactagagaatatat-ataaaatctaatggactctaa 28063066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 236632 - 236581
Alignment:
Q  97 taacttactaatataaagatccagtaacttaagttcaatactttattattta 148  Q
    ||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  236632 taacttagtaatataaagacccaataacttaagctcaatactttattattta 236581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 9365107 - 9365165
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaa 99  Q
    |||| |||||||||||||||||||| |||||||||||| |||||||||||| || |||||    
T  9365107 aataacttaacattacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 9365165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 2979698 - 2979649
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaat 90  Q
    ||||||||||||||||||||| ||| |||||||||| | ||||||||||||    
T  2979698 aatagcttaacattacaaaagattacaagagaatatgt-ataaaacctaat 2979649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 24137705 - 24137606
Alignment:
Q  44 gcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttatt 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||  ||| ||||| ||| |||||||||||||    
T  24137705 gcttaacattacagaaggttataagagaatatataataaaacctaatagactctaacttactagtgtaaaggcccaataactgaagctcaatactttatt 24137606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 11320486 - 11320585
Alignment:
Q  51 attacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaac 150  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||| ||| ||||||||||  ||||| ||||||| ||||    
T  11320486 attacaaaaggttataagagaatatataataaaat-taatggactccaacttactaatataaagagccaataacttaagtctaatacattattatctaac 11320584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 11343924 - 11344028
Alignment:
Q  40 aatagcttaacattacaaaag-gttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatact 138  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||| |||| |||||||||||||||||||||| | ||| ||| |||||  |||||||    
T  11343924 aatagcttaacattacaaaaatgttataagagagtatataataaaacttaat-gactctaacttactaatataaatagccaataa-ttaagcccaatact 11344021  T
Q  139 ttattat 145  Q
    |||||||    
T  11344022 ttattat 11344028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 6643473 - 6643402
Alignment:
Q  41 atagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataa 112  Q
    |||||||||||||  ||||||||||| |||||||||||||||||  |||| ||||||| |||||||||||||    
T  6643473 atagcttaacattgtaaaaggttatatgagaatatataataaaatttaattgactctatcttactaatataa 6643402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 9512562 - 9512489
Alignment:
Q  37 caaaatagcttaacattacaaaaggttat-aagagaatatataataaaacctaatggactctaacttactaatat 110  Q
    |||||||| |||| |||||||||||||   |||||||||||||||||| ||||||||||||||| ||||||||||    
T  9512562 caaaatagattaatattacaaaaggtttgcaagagaatatataataaa-cctaatggactctaatttactaatat 9512489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 11298 - 11227
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatata 111  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||    
T  11298 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 11227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 406245 - 406356
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactt 139  Q
    |||| ||||| |||| |||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||||  ||| ||||||||    |||||||    
T  406245 aataacttaatattagaaaaggttataatagaatatataataaaacttaaaggactctaacttgctaatataaaggcccaataacttaaacctaatactt 406344  T
Q  140 tattatttaaca 151  Q
    |||||| |||||    
T  406345 tattatctaaca 406356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 20242828 - 20242727
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaa 149  Q
    |||||| ||| ||||||| ||||||||||||||||  |||  |||| |||||||||||||||||| |||| |||||||| | ||||| ||||||||||||    
T  20242828 cattactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaa 20242729  T
Q  150 ca 151  Q
    ||    
T  20242728 ca 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 20250332 - 20250433
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaa 149  Q
    |||||| ||| ||||||| ||||||||||||||||  |||  |||| |||||||||||||||||| |||| |||||||| | ||||| ||||||||||||    
T  20250332 cattactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaaggtccaataacttaaatccaatattttattatttaa 20250431  T
Q  150 ca 151  Q
    ||    
T  20250432 ca 20250433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 43615545 - 43615458
Alignment:
Q  64 ataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaaca 151  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||    || ||||| |||||||||| |||||||| |||||    
T  43615545 ataagaaaatatataataaaatctaatggactctaacttactaatataaaagctcaataactaaagttcaatattttattatctaaca 43615458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 33199516 - 33199415
Alignment:
Q  45 cttaacattacaaaaggttataagagaatatataataaaacctaa-tggactctaacttactaatataaagatccagtaacttaagttcaatactttatt 143  Q
    |||||||||||||||| |||||||  ||||||||||||||||||| |  ||||| |||||||||||||||    || ||||||||| |||||||||||||    
T  33199516 cttaacattacaaaagattataaggaaatatataataaaacctaattatactctgacttactaatataaaagctcaataacttaagatcaatactttatt 33199417  T
Q  144 at 145  Q
    ||    
T  33199416 at 33199415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 20241126 - 20241063
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaa 113  Q
    |||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  20241126 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 20241063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 20251941 - 20252004
Alignment:
Q  50 cattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaa 113  Q
    |||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  20251941 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 20252004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 44374722 - 44374651
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatata 111  Q
    ||||||| ||||||| ||||| |||||| ||||||||||||||||| |||| |||||||||| |||||||||    
T  44374722 aatagctaaacattaaaaaagattataaaagaatatataataaaacataatagactctaactcactaatata 44374651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 43414199 - 43414101
Alignment:
Q  51 attacaaaaggttataagagaatatataataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaac 150  Q
    ||||||||||||||| |||||||||||||||||   ||  ||||||||||||| |||||||||  | || ||||||| || |||||||||||||||||||    
T  43414199 attacaaaaggttatgagagaatatataataaatt-tagcggactctaacttattaatataaaagttcaataactta-gtccaatactttattatttaac 43414102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 43516234 - 43516178
Alignment:
Q  42 tagcttaacattacaaaaggttataagagaatatataataaaacctaatggactctaa 99  Q
    ||||||||||||||| |||||||  ||||||||||| |||||||||||||||||||||    
T  43516234 tagcttaacattacataaggttactagagaatatat-ataaaacctaatggactctaa 43516178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 20093300 - 20093403
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggact-ctaacttactaatataaagatccagtaacttaagttcaatact 138  Q
    |||| ||||||||||||| |||||| ||||||||||   |||||||||||| |||| |||| ||| ||||||||| ||||| ||||||| |   ||||||    
T  20093300 aataacttaacattacaagaggttacaagagaatat---ataaaacctaatagactgctaatttagtaatataaatatccaataacttatgcctaatact 20093396  T
Q  139 ttattat 145  Q
    |||||||    
T  20093397 ttattat 20093403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 16578791 - 16578856
Alignment:
Q  49 acattacaaaaggttataagagaatatataataaaacctaatggact-ctaacttactaatataaag 114  Q
    |||||||||||||||| || ||||||||| |||||| |||||||||| |||||||| ||||||||||    
T  16578791 acattacaaaaggttacaatagaatatat-ataaaatctaatggactgctaacttagtaatataaag 16578856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 14526 - 14638
Alignment:
Q  40 aatagcttaacattacaaaaggttataagagaatatataataaaacctaatggactct-aacttactaat-ataaagatccagtaacttaagttcaatac 137  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||||  |||| | |||||| |||| ||||||  ||| || ||||||  ||||||    
T  14526 aatagcttaatactacaaaaggttataagagaatatat-ataaaacctaacagactatgaacttagtaatgataaaggcccaatagcttaagcccaatac 14624  T
Q  138 tttattatttaaca 151  Q
    |||||||| |||||    
T  14625 tttattatctaaca 14638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 14290 - 14364
Alignment:
Q  77 taataaaacctaatggactctaacttactaatataaagatccagtaacttaagttcaatactttattatttaaca 151  Q
    ||||||||| ||| | ||||||||||||||||||||||  ||  ||| |||||  ||||| ||||||||||||||    
T  14290 taataaaacataacgtactctaacttactaatataaaggccccataatttaagcccaatattttattatttaaca 14364  T

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