View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20646_high_5 (Length: 247)
Name: NF20646_high_5
Description: NF20646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20646_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 26453444 - 26453612
Alignment:
| Q |
1 |
gggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattcttttgctaagaaaactaggaaagaataggcg |
100 |
Q |
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| T |
26453444 |
gggagaattgttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatgttcttttgctaagaaaactaggaaagaataggcg |
26453543 |
T |
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| Q |
101 |
ttggagatgctcttatgacttaacatgttttttaagaccctagatgcagttccctcgtgtgatgtaccc |
169 |
Q |
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| T |
26453544 |
ttggagatgctcttatgacttaacatgttttttaagaccctagatgcagttccctcgtgtgatgtaccc |
26453612 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 26454087 - 26454150
Alignment:
| Q |
168 |
cctgaaccttgtatgcatcacgcataatgcattgattgaatagcttcaactgttctcaaatttt |
231 |
Q |
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| T |
26454087 |
cctgaaccttgtatgcatcacgcataatgcattgattgaatagcttcaactattttcaaatttt |
26454150 |
T |
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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 47680376 - 47680266
Alignment:
| Q |
1 |
gggagaatttttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattct--tttgctaagaaaactaggaaagaatagg |
98 |
Q |
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| T |
47680376 |
gggagaactgttctccacaatgtcatccagctcattgatctccaatgcataaaatataaaaatatgttcttgtttgctaagaacaccaagaaagaacaga |
47680277 |
T |
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| Q |
99 |
cgttggagatg |
109 |
Q |
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| T |
47680276 |
cgttggagatg |
47680266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 31704810 - 31704706
Alignment:
| Q |
11 |
ttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattct--tttgctaagaaaactaggaaagaataggcgttggagat |
108 |
Q |
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|||||||||| |||||||||||| |||||||||| |||| ||||||||||||| |||| ||||||||||| |||| ||||||| ||| | |||||| |
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| T |
31704810 |
ttctccacagtgtcatccagctcaacgatctccaatgcatacaacataaaaatatgttcttgtttgctaagaatactaagaaagaacaggaatcggagat |
31704711 |
T |
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| Q |
109 |
gctct |
113 |
Q |
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| T |
31704710 |
gctct |
31704706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 33948456 - 33948371
Alignment:
| Q |
11 |
ttctccacagggtcatccagctcgttgatctccaatacataaaacataaaaatatattct--tttgctaagaaaactaggaaagaa |
94 |
Q |
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| T |
33948456 |
ttctccacagtgtcatccacctcattgatctccaatacatagaacataaaaatatgttcttgtttgctaagaacactaagaaagaa |
33948371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 11727316 - 11727407
Alignment:
| Q |
24 |
catccagctcgttgatctccaatacataaaacataaaaatatattctt--ttgctaagaaaactaggaaagaataggcgttggagatgctct |
113 |
Q |
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| T |
11727316 |
catccaactcattgatctccaatgcatataacataaaaatatgttcttgattgctaagaacactagaaaagaacatgcgttggagatactct |
11727407 |
T |
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