View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20646_high_7 (Length: 246)

Name: NF20646_high_7
Description: NF20646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20646_high_7
NF20646_high_7
[»] chr3 (3 HSPs)
chr3 (75-168)||(26453519-26453612)
chr3 (1-82)||(26453387-26453468)
chr3 (167-230)||(26454087-26454150)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 26453519 - 26453612
Alignment:
Q  75 taagaaaactaggaaagaataggcgttggagatgctcttatgacttaacatgttttttaagaccctagatgcagttccctcgtgtgatgtaccc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453519 taagaaaactaggaaagaataggcgttggagatgctcttatgacttaacatgttttttaagaccctagatgcagttccctcgtgtgatgtaccc 26453612  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26453468 - 26453387
Alignment:
Q  1 tgaccctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaa 82  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453468 tgaccctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaa 26453387  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 26454087 - 26454150
Alignment:
Q  167 cctgaaccttgtatgcatcacgcataatgcattgattgaatagcttcaactgttctcaaatttt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  26454087 cctgaaccttgtatgcatcacgcataatgcattgattgaatagcttcaactattttcaaatttt 26454150  T

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