View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20646_low_12 (Length: 240)
Name: NF20646_low_12
Description: NF20646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20646_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 120174 - 120363
Alignment:
| Q |
25 |
ctacatgtattatcacttttcttaatggtcttgtttgaggaaggttgaacatcaggatgtaacccagaaaaagctgtcaaaaagtacttgtgacggtata |
124 |
Q |
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| T |
120174 |
ctacatgtattatcacttttcttaatggtcttgtttgaggaaggttgaacaacaggatgtaaaccagacacagctgtcaaaaagtacttgtgacggtata |
120273 |
T |
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| Q |
125 |
gagcatcaacaataagaacagaatcataagcattgacctagaaaaggaatcaaataaagctagttttgaagctgaaccaacttaagaata |
214 |
Q |
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| T |
120274 |
gagcatcaacaatacgaacagaatcataaccattgacctagaaaaagaaacaaataaaactagttttgaagctgaaccaacttaagaata |
120363 |
T |
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Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 26179413 - 26179603
Alignment:
| Q |
28 |
catgtattatcacttttcttaatggtcttgtttgaggaaggttgaacatcaggatgtaacccagaaaaagctgtcaaaaagtacttgtgacggtatagag |
127 |
Q |
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| T |
26179413 |
catgtattatcacttttcttaatgatcttgtttgacaaaggttgaacaacaggatgtaaaccagacacaactgccaaaa-gtacttgtgatggtattgag |
26179511 |
T |
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| Q |
128 |
catcaacaataagaacagaatcataagcattgacctagaaaaggaatcaaataaagctagttttgaagctgaaccaacttaagaataaatta |
219 |
Q |
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| T |
26179512 |
catcaacgatacgaacagaatcataagcattgacctagaaaaagaaacaaattaaactagttttgaagctgaaccaacttaagaatatatta |
26179603 |
T |
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