View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20646_low_2 (Length: 573)

Name: NF20646_low_2
Description: NF20646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20646_low_2
NF20646_low_2
[»] chr3 (2 HSPs)
chr3 (1-561)||(26452896-26453468)
chr3 (504-573)||(26452805-26452874)
[»] chr4 (11 HSPs)
chr4 (338-481)||(23676325-23676469)
chr4 (483-573)||(21538924-21539014)
chr4 (499-566)||(5979786-5979853)
chr4 (483-573)||(4873037-4873127)
chr4 (499-573)||(3703584-3703658)
chr4 (498-540)||(12329026-12329068)
chr4 (493-539)||(21538844-21538890)
chr4 (499-541)||(25812263-25812305)
chr4 (488-525)||(2605367-2605404)
chr4 (518-563)||(48292387-48292432)
chr4 (498-539)||(53860895-53860936)
[»] chr1 (7 HSPs)
chr1 (178-235)||(47680531-47680588)
chr1 (482-566)||(49632910-49632995)
chr1 (505-539)||(11985458-11985492)
chr1 (483-573)||(30018564-30018653)
chr1 (66-148)||(47680406-47680488)
chr1 (488-540)||(30018687-30018740)
chr1 (483-563)||(36724171-36724251)
[»] chr8 (2 HSPs)
chr8 (483-573)||(25939281-25939371)
chr8 (492-540)||(9040955-9041003)
[»] scaffold0110 (2 HSPs)
scaffold0110 (483-561)||(11425-11503)
scaffold0110 (483-561)||(19162-19240)
[»] chr7 (5 HSPs)
chr7 (504-573)||(27866683-27866752)
chr7 (488-532)||(36390712-36390756)
chr7 (499-573)||(48073016-48073090)
chr7 (509-561)||(27747373-27747425)
chr7 (504-536)||(39933632-39933664)
[»] chr6 (4 HSPs)
chr6 (505-561)||(30351451-30351507)
chr6 (492-539)||(13613749-13613796)
chr6 (499-566)||(16396652-16396719)
chr6 (483-573)||(3806174-3806263)
[»] chr5 (10 HSPs)
chr5 (488-540)||(10818875-10818927)
chr5 (483-542)||(10818787-10818845)
chr5 (483-573)||(14613533-14613623)
chr5 (502-547)||(4639521-4639566)
chr5 (483-566)||(28976687-28976770)
chr5 (499-573)||(6706273-6706347)
chr5 (486-539)||(4192001-4192054)
chr5 (488-540)||(8367019-8367071)
chr5 (216-244)||(11727230-11727258)
chr5 (499-539)||(35924595-35924635)
[»] chr2 (3 HSPs)
chr2 (488-570)||(13793669-13793751)
chr2 (492-540)||(37096596-37096644)
chr2 (504-573)||(39994520-39994590)


Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 26453468 - 26452896
Alignment:
Q  1 tgaccctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggta 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26453468 tgaccctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggta 26453369  T
Q  101 tattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat------------gagttctagcattggagnnnnnnnttcagtggttgttaaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||       ||||||||||||||||    
T  26453368 tattggaaaatgagagaagaaatatgaggagcctacataaagtaaaataggaagtgtgttgagttctagcattggagaaaaaaattcagtggttgttaaa 26453269  T
Q  189 tcctacatggcatacttggacccacaatttagcagctaagaacaaaaaatttgttccagtgctttagaagctctaagattgatcggcacacccctttcca 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26453268 tcctacatggcatacttggacccacaatttagcagctaagaacaaaatatttgttccagtgctttagaagctccaagattgatcggcacacccctttcca 26453169  T
Q  289 ttgctcagcctatcagatcgtaacttctgctaaacaannnnnnnnctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtg 388  Q
    ||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453168 ttgttcagcctatcagatcgtaacttctgctaaacaattttttttctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtg 26453069  T
Q  389 aaattttaacaattcacagggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaat 488  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453068 aaattttaacaattcacggggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaat 26452969  T
Q  489 tgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 561  Q
    || ||||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  26452968 tgttttttggacatccattatttcctagaaacacatgaaaatgaccaaaaatactccagcaatagttaactac 26452896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 504 - 573
Target Start/End: Original strand, 26452805 - 26452874
Alignment:
Q  504 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452805 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 26452874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 338 - 481
Target Start/End: Original strand, 23676325 - 23676469
Alignment:
Q  338 aaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaattttaa-caattcacagggtccgtgagcatttacccttaagtcagt 436  Q
    |||| ||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||| | ||||||||    
T  23676325 aaaggtggactaaattctaggattcaatgcttgtttttctcactccatgtgaaattttaagcaattcaaggggtccgtgagcatttaccgtcaagtcagt 23676424  T
Q  437 gatgggagacaacagcacacaaagcccagtaggacaaaaataaag 481  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||    
T  23676425 gatgggagacaccagcacagaaatcccagtaggacaaaaataaag 23676469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 573
Target Start/End: Complemental strand, 21539014 - 21538924
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    ||||||||||||||  || |||| ||||| ||||||||||| | ||||||||||||||||||||    ||||||| |||||||||||||||    
T  21539014 gagaattgctttttaaactttcaatgtttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttata 21538924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 566
Target Start/End: Complemental strand, 5979853 - 5979786
Alignment:
Q  499 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 566  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||||| |  ||||||||||||||||    
T  5979853 acattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactaccgctg 5979786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 483 - 573
Target Start/End: Original strand, 4873037 - 4873127
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    ||||||| |||||| ||| | |||| ||||||| ||||||||| |||||| |||||||||  ||||  |||||||||||||||| ||||||    
T  4873037 gagaatttcttttttgacttccattattttctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttata 4873127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 573
Target Start/End: Original strand, 3703584 - 3703658
Alignment:
Q  499 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||| ||||||||| ||||||||||||||||||||||||||  |  ||||  ||||||||||||| || ||||||    
T  3703584 acatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccgttgacttata 3703658  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 12329068 - 12329026
Alignment:
Q  498 gacattcattgttttctagaaacacatgaaaatgaccaaaaac 540  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||    
T  12329068 gacatccattgttttttagaaacacatgaaaatgatcaaaaac 12329026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 21538844 - 21538890
Alignment:
Q  493 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 539  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  21538844 tttttgacatccattgttttctagaaacacatggaaataaccaaaaa 21538890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 25812263 - 25812305
Alignment:
Q  499 acattcattgttttctagaaacacatgaaaatgaccaaaaaca 541  Q
    |||| |||||||||||||||||||||| |||||| ||||||||    
T  25812263 acatccattgttttctagaaacacatggaaatgatcaaaaaca 25812305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 525
Target Start/End: Original strand, 2605367 - 2605404
Alignment:
Q  488 ttgctttttggacattcattgttttctagaaacacatg 525  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2605367 ttgcttttttgacattcattgtttcctagaaacacatg 2605404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 563
Target Start/End: Complemental strand, 48292432 - 48292387
Alignment:
Q  518 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 563  Q
    |||||||| |||||||||||||||| |||||  |||||||||||||    
T  48292432 aacacatgtaaatgaccaaaaacactccagcggtagttaactaccg 48292387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 539
Target Start/End: Complemental strand, 53860936 - 53860895
Alignment:
Q  498 gacattcattgttttctagaaacacatgaaaatgaccaaaaa 539  Q
    ||||| |||||||| ||||||||||||| |||||||||||||    
T  53860936 gacatccattgtttcctagaaacacatggaaatgaccaaaaa 53860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 47680531 - 47680588
Alignment:
Q  178 tggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaa 235  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47680531 tggttgttaaatcctacatggcatacttggacccaatatttagcagctaagaacaaaa 47680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 566
Target Start/End: Complemental strand, 49632995 - 49632910
Alignment:
Q  482 cgagaattgctttttg-gacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 566  Q
    |||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||||| ||  |   ||||||||||||||||    
T  49632995 cgagaattgctttttttgacatccattgatttctagaaacacatggaaatgaccaaaaacatcctcgtggtagttaactaccgctg 49632910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 11985458 - 11985492
Alignment:
Q  505 attgttttctagaaacacatgaaaatgaccaaaaa 539  Q
    |||||||||||||||||||||||||||||||||||    
T  11985458 attgttttctagaaacacatgaaaatgaccaaaaa 11985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 573
Target Start/End: Original strand, 30018564 - 30018653
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    ||||||||||||||| |||  |||||||| |||||| | ||||||||||| ||||||||| | |||  |||||||||| |||  |||||||    
T  30018564 gagaattgctttttg-acaaccattgtttcctagaagcgcatgaaaatgatcaaaaacactcaagcggtagttaactatcgcgtgcttata 30018653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
Q  66 cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat 148  Q
    ||||||| |||||| |||  | ||||||||||||||| ||||  || |||||||||| | ||||  |||||||||||||||||    
T  47680406 cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat 47680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 30018740 - 30018687
Alignment:
Q  488 ttgctttttggacattcattgttttctagaaa-cacatgaaaatgaccaaaaac 540  Q
    ||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||    
T  30018740 ttgcttttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaac 30018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 563
Target Start/End: Original strand, 36724171 - 36724251
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 563  Q
    ||||||| ||||||  |||||  ||||||||||||| |  ||| ||||||||||||||| |||||   |||||||||||||    
T  36724171 gagaattcctttttttacatttgttgttttctagaagcgtatggaaatgaccaaaaacatcccagtggtagttaactaccg 36724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 573
Target Start/End: Original strand, 25939281 - 25939371
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||||||| |||||| | ||||||||||| ||||||||| ||| ||| |||||||||||| | |||  |||||||||||||||||||||||    
T  25939281 gagaattgttttttgaatattcattgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactaccgctggcttata 25939371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 540
Target Start/End: Complemental strand, 9041003 - 9040955
Alignment:
Q  492 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 540  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||    
T  9041003 ttttttgacattcattgtttcctagaaacacatggaaatgactaaaaac 9040955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 561
Target Start/End: Original strand, 11425 - 11503
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 561  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  |||||||||||    
T  11425 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactac 11503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 561
Target Start/End: Original strand, 19162 - 19240
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 561  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  |||||||||||    
T  19162 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactac 19240  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 504 - 573
Target Start/End: Complemental strand, 27866752 - 27866683
Alignment:
Q  504 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||||||| ||||||||| |||||||||||| |||||| || | | ||||||||||||||||| ||||||    
T  27866752 cattgtttcctagaaacatatgaaaatgaccgaaaacaaccgaacgatagttaactaccgctgacttata 27866683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 532
Target Start/End: Original strand, 36390712 - 36390756
Alignment:
Q  488 ttgctttttggacattcattgttttctagaaacacatgaaaatga 532  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||    
T  36390712 ttgcttttttgacatttagtgttttctagaaacacatgaaaatga 36390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 573
Target Start/End: Original strand, 48073016 - 48073090
Alignment:
Q  499 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||||| ||||||  |||||||||||| ||||||||||||| || | ||| |||||||||||   ||||||||||    
T  48073016 acattctttgtttattagaaacacatggaaatgaccaaaaatactctagcgatagttaactattactggcttata 48073090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 561
Target Start/End: Original strand, 27747373 - 27747425
Alignment:
Q  509 ttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 561  Q
    ||||||||||||||||||||||||| ||||| | | ||||  |||||||||||    
T  27747373 ttttctagaaacacatgaaaatgactaaaaataactcagcggtagttaactac 27747425  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 536
Target Start/End: Complemental strand, 39933664 - 39933632
Alignment:
Q  504 cattgttttctagaaacacatgaaaatgaccaa 536  Q
    |||| ||||||||||||||||||||||||||||    
T  39933664 cattattttctagaaacacatgaaaatgaccaa 39933632  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 505 - 561
Target Start/End: Original strand, 30351451 - 30351507
Alignment:
Q  505 attgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 561  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  30351451 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 30351507  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 539
Target Start/End: Original strand, 13613749 - 13613796
Alignment:
Q  492 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 539  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||    
T  13613749 tttttcgacatctattgttttctagaaacacatgaaaatgaccaaaaa 13613796  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 499 - 566
Target Start/End: Complemental strand, 16396719 - 16396652
Alignment:
Q  499 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 566  Q
    |||| ||||||||| |||||| || |||||||||| |||||||||||| |  ||||||||||||||||    
T  16396719 acatccattgttttttagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactaccgctg 16396652  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 573
Target Start/End: Original strand, 3806174 - 3806263
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||||||||||||   |||| ||| ||||||||||||||||| |||| ||||||||||| |||| ||||| | |||||| |||| ||||||    
T  3806174 gagaattgcttttgtcacatccatcgttttctagaaacacat-aaaaagaccaaaaacatcccaacaataatcaactacagctgacttata 3806263  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 10818927 - 10818875
Alignment:
Q  488 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 540  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  10818927 ttgcttttttgacatccattgttttctaaaaacacatggaaatgaccaaaaac 10818875  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 10818787 - 10818845
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacac 542  Q
    ||||||||||||||  |||| ||||||||||||||||||||| ||||| |||||||||||    
T  10818787 gagaattgcttttttaacat-cattgttttctagaaacacattaaaattaccaaaaacac 10818845  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 573
Target Start/End: Original strand, 14613533 - 14613623
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||||||||||||    ||| |||||||| |||||||||||||||||| ||||||||||| ||| |  |||||| | || |||||||||||    
T  14613533 gagaattgcttttctcgcatccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttata 14613623  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 502 - 547
Target Start/End: Complemental strand, 4639566 - 4639521
Alignment:
Q  502 ttcattgttttctagaaacacatgaaaatgaccaaaaacaccccag 547  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4639566 ttcattgtttcttagaaacacatgaaaatgatcaaaaacaccccag 4639521  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 566
Target Start/End: Complemental strand, 28976770 - 28976687
Alignment:
Q  483 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 566  Q
    |||||||||||||   |||| ||||||||  |||||| |||||||||||| ||||||||  | | | |||||||||||||||||    
T  28976770 gagaattgcttttctcacatccattgtttcttagaaatacatgaaaatgatcaaaaacattcaaacgatagttaactaccgctg 28976687  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 573
Target Start/End: Original strand, 6706273 - 6706347
Alignment:
Q  499 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||||||||||||  || |||||||||||||| ||||||||||   ||||  ||||||||||||| || ||||||    
T  6706273 acattcattgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttata 6706347  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Complemental strand, 4192054 - 4192001
Alignment:
Q  486 aattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 539  Q
    ||||||| |||  |||| |||||||| ||| |||||||||||||||||||||||    
T  4192054 aattgctgtttacacatccattgtttcctacaaacacatgaaaatgaccaaaaa 4192001  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 540
Target Start/End: Original strand, 8367019 - 8367071
Alignment:
Q  488 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 540  Q
    ||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  8367019 ttgcttttttgacatccattgtttcctagaaacccatagaaatgaccaaaaac 8367071  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 11727258 - 11727230
Alignment:
Q  216 tttagcagctaagaacaaaaaatttgttc 244  Q
    |||||||||||||||||||||||||||||    
T  11727258 tttagcagctaagaacaaaaaatttgttc 11727230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 35924595 - 35924635
Alignment:
Q  499 acattcattgttttctagaaacacatgaaaatgaccaaaaa 539  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
T  35924595 acatccattattttctagaaaaacatgaaaatgaccaaaaa 35924635  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 570
Target Start/End: Original strand, 13793669 - 13793751
Alignment:
Q  488 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggctt 570  Q
    ||||| ||| ||||| ||||||||  |||||||| |||| ||||||||||||||||||| |  ||||||||||| | ||||||    
T  13793669 ttgctgttttgacatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactacggttggctt 13793751  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 492 - 540
Target Start/End: Original strand, 37096596 - 37096644
Alignment:
Q  492 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 540  Q
    ||||| ||| |||||||||||||||||||||||| |||||| |||||||    
T  37096596 ttttttgaccttcattgttttctagaaacacatggaaatgatcaaaaac 37096644  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 573
Target Start/End: Complemental strand, 39994590 - 39994520
Alignment:
Q  504 cattgttttctagaaacacatgaaaatga-ccaaaaacaccccagcaatagttaactaccgctggcttata 573  Q
    |||||||||||||||||||||| |||||| ||||||| |  ||| ||| |||||||||||| || ||||||    
T  39994590 cattgttttctagaaacacatggaaatgacccaaaaaaattccaacaacagttaactaccgttgacttata 39994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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