View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20646_low_3 (Length: 392)
Name: NF20646_low_3
Description: NF20646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20646_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 16008513 - 16008126
Alignment:
| Q |
7 |
gcagcacagattacgactgtgatgagctaatatgaaatataatataaaataatttttgtgtgtccaatcgatgcaatgagatttaaacctagaaattcat |
106 |
Q |
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| T |
16008513 |
gcagcccagattgcaactttgatgagctcatatgaaataaaatataaaataatttttgtgtgtccaatcgatgcaatgagatttaaacctagaaattcat |
16008414 |
T |
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| Q |
107 |
acgcatagtgcccaaatccttcgccac--gaccaaaccaatgctcatggcttaaatggatttacatagttacttagtaatggatcatactacaaaagtaa |
204 |
Q |
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| T |
16008413 |
acgcatagtgcccaaatccttcgccactagaccaaaccaaggctcatggcttaaatggatttacatagttacttagtaatggatcatactacaaaagtaa |
16008314 |
T |
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| Q |
205 |
ggggctactggctaattcatttcgatatatttggaaaaaggtactcgcatttaggacagtttgctcctctcggggcagaacaaacagcagctcagcttcc |
304 |
Q |
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| T |
16008313 |
gtggctactggctaattcatttcgatatatttggaaaaaggtactcgcattttggacaatttgctcctctcggggcagaacaaacagcagctcagcttcc |
16008214 |
T |
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| Q |
305 |
gggagattgggtttcaattggacacagcagtcagtggctgtggtattcggtatatgtaaggtatttttacattcaataaatgtaaact |
392 |
Q |
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| T |
16008213 |
gggagattgggtttcaattggacacagcagtcagtggttgtggtattcggtatatgtaaggtatttttacgttcaataaatgtaaact |
16008126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 368
Target Start/End: Original strand, 36128703 - 36128829
Alignment:
| Q |
242 |
aaggtactcgcatttaggacagtttgctcctctcggggcagaacaaacagcagctcagcttccgggagattgggtttcaattggacacagcagtcagtgg |
341 |
Q |
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| T |
36128703 |
aaggtacaagcatttaggtcaatttgctcctctgggaggcgagcagacagctgcacagctacctggagattgggtttcaattggacacagtagtcaatgg |
36128802 |
T |
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| Q |
342 |
ctgtggtattcggtatatgtaaggtat |
368 |
Q |
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| T |
36128803 |
ttgtggtattctgtctatgcaaggtat |
36128829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 369
Target Start/End: Complemental strand, 2922512 - 2922398
Alignment:
| Q |
255 |
ttaggacagtttgctcctctcggggcagaacaaacagcagctcagcttccgggagattgggtttcaattggacacagcagtcagtggctgtggtattcgg |
354 |
Q |
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| T |
2922512 |
ttaggtcagtttgctcctttgggaggagagaaaacagctgcccagcttcctggggattgggtttcaattggtcacagcagtcaatggttgtggtattctg |
2922413 |
T |
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| Q |
355 |
tatatgtaaggtatt |
369 |
Q |
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| |||| |||||||| |
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| T |
2922412 |
tctatgcaaggtatt |
2922398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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