View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20646_low_5 (Length: 325)
Name: NF20646_low_5
Description: NF20646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20646_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 120 - 315
Target Start/End: Complemental strand, 49029834 - 49029639
Alignment:
| Q |
120 |
aaaaacccagagaattaattatcgaaaaacaaaaagataagataaaggtctagatagaagtgtaccttttttgtggtgggtggtgttgtaggagtaagga |
219 |
Q |
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| T |
49029834 |
aaaaacccagagaattaattatcgaaaaacaaaaagataagataaaggtctagatagaagtgtaccttttttgtggtgggtggtgttgtaggagtaagga |
49029735 |
T |
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| Q |
220 |
tagtttgggcacgaattaaaggctgatatgtacttgttcttctagctttccatgttgatgtaagtcgtaacttcaactccttccattgcacctttg |
315 |
Q |
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| T |
49029734 |
tagtttgggcacgaattaaaggctgatatgtacttgttcttccagctttccatgttgatgtaagtcgtaacttcaactccttccactgcacctttg |
49029639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 49029892 - 49029849
Alignment:
| Q |
20 |
gtgatttgaatttatcgacacatgagtgcctatttatattagga |
63 |
Q |
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| T |
49029892 |
gtgatttgaatttatcgacacatgagtgcctatttatattagga |
49029849 |
T |
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