View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20647_high_2 (Length: 423)
Name: NF20647_high_2
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20647_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 39658158 - 39658016
Alignment:
| Q |
45 |
aaagggaaacaattatctatttattgagccgtattattattggtgtcagtttggaaatacgtttgaccggtccacattttcctcatgagcgttaaattcc |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39658158 |
aaagggaaacaattatctatttattgagccgtattattattggtgtcagtttggaaatacgtttgaccggtccacattttcctcatgagcgttaaattcc |
39658059 |
T |
|
| Q |
145 |
aggatttggaatttatttgattctccacctgatttgctaatat |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39658058 |
aggatttggaatttatttgattctccacctgatttgctaatat |
39658016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 39664924 - 39664825
Alignment:
| Q |
59 |
atctatttattgagccgtattattattggtg---tcagtttggaaatacgtttgaccggtccacattttcctcatgagcgttaaattccaggatttggaa |
155 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||| ||||||| ||| |||||||| |
|
|
| T |
39664924 |
atctattttttgagccgtgttattattggtggtgtcaggttggaaatacgtttgacaggtccacattttcctcatcagcattaaattacagtatttggaa |
39664825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 403
Target Start/End: Complemental strand, 39664709 - 39664629
Alignment:
| Q |
320 |
tagcattggacaagcaagcaaaccctaggaaataaacacctagtgataacggcagttcaaaaacagtttctgtatcatgtcgga |
403 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||||| |||||||||| | |||||||| |||||||||||||| |
|
|
| T |
39664709 |
tagcattggacaagca-gaaaaccctaggaaataaac--ctagtgatcacggcagttccagaacagtttttgtatcatgtcgga |
39664629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 39664821 - 39664762
Alignment:
| Q |
200 |
catttcctcctttattctaggacttactatcagttttttcacatctaggg-tagggcttggca |
261 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
39664821 |
catttcctcctttattctcggactta---tcagttttttcacatctagggttagggcttggca |
39664762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University