View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20647_high_7 (Length: 281)
Name: NF20647_high_7
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20647_high_7 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0075 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 10320 - 10257
Alignment:
| Q |
11 |
cacagacatgttttagttaatggtcgtatagtagatagaccaagttatcgttgcaaacccgaag |
74 |
Q |
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| T |
10320 |
cacagacatgttttagttaatggtcgtatagtagatataccaagttatcgttgcaaacccgaag |
10257 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 18181313 - 18181250
Alignment:
| Q |
11 |
cacagacatgttttagttaatggtcgtatagtagatagaccaagttatcgttgcaaacccgaag |
74 |
Q |
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| T |
18181313 |
cacagacatgttttagttaatggtcgtatagtagatataccaagttatcgttgcaaacccgaag |
18181250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0075 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 20585 - 20541
Alignment:
| Q |
30 |
atggtcgtatagtagatagaccaagttatcgttgcaaacccgaag |
74 |
Q |
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| T |
20585 |
atggtcgtatagtagatataccaagttatcgttgcaaacccgaag |
20541 |
T |
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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 245480 - 245424
Alignment:
| Q |
14 |
agacatgttttagttaatggtcgtatagtagatagaccaagttatcgttgcaaaccc |
70 |
Q |
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| T |
245480 |
agacatattttagttaatggccgtatagtcaatataccaagttttcgttgcaaaccc |
245424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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