View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20647_low_1 (Length: 907)
Name: NF20647_low_1
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20647_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 1 - 907
Target Start/End: Original strand, 43094297 - 43095168
Alignment:
| Q |
1 |
gttccaatatcatgtctcttacatgaaatgtacttgttaacaagtctcgtgttattgtgacatcaaattctgcaaattaacagacagtagtcaagagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
43094297 |
gttccaatatcatgtctcttacatgaaatgtacttgttaacaagtctcgtgttattgtgacatcaaattcagcaaattaacagacagtattcaagagtga |
43094396 |
T |
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| Q |
101 |
accatctaaaacaaaaacacatactttctgcccaattctgggcacacaagagtttctctaaacga----cttgcttagaagtacgtatccaaattttgta |
196 |
Q |
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| T |
43094397 |
accatctaaaacaaaaacacatactttctgcccaattctgggcacacaagagtttctctaaacgatcgacttgcttagaagtacgtatccaaattttgta |
43094496 |
T |
|
| Q |
197 |
tatataaaggatatattacaaacccaagcaatgtgatacttgagatttttgaaatatcactcaaacaactcctcaacataaaaacggatgcttccaacca |
296 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
43094497 |
tata----------------aacccaagcaatgtgacacttgagatttttgaaatatcactcaaacaactc---aacattaaaacggatgcttccaacca |
43094577 |
T |
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| Q |
297 |
ggctctatctatcttacgtttaatttaaaattatagtataccaatgcaaatcttgctggtagattgatggctcgttaatgtattacatatgtttttcctc |
396 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43094578 |
ggctctatctatcttacgtttgatttaaaattatagtataccaatgcaaatcttgttggtagattgatggctcgttaatgtattacatatgtttttcctc |
43094677 |
T |
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| Q |
397 |
aatttatcaactatatatcaagagacatgataaaagaaggtggagccattgatagaggaagggtggggcaggaacaagactgtgtcatgatatcttatcc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43094678 |
aatttatcaactatatatcaagagacatgataaaagaaggtggagccattgatagaggaagggtggggcaggaacaagactgtgtcatgatatcttatcc |
43094777 |
T |
|
| Q |
497 |
accccgctgttagcaaaaacacatgcaaaagtcaattccccacaactgtgtttagacagctctataggatttattacaattctctatttaaatacctact |
596 |
Q |
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| T |
43094778 |
accccgctgtta------------gcaaaagtcaattccccacaactgtgtttagacagctctataggatttatcacaattctctatttaaatacctact |
43094865 |
T |
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| Q |
597 |
attgctaactgtgttttattctatcaaatcaaaaattgatttcgtaaaattgattttaattagaagtgactttatgttac------aatattttatgcaa |
690 |
Q |
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| T |
43094866 |
attgctaactgtgttttattctatcacatca--------------aaaattgattttagttagaagtgactttatgttacaatgttaatgttttatgtaa |
43094951 |
T |
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| Q |
691 |
tgtgaaactcgaacaataaatttaaattttgaaatcaaatttgcagactaaattgcaatttctaacttctaacttagaattaattttaactcttcaaaat |
790 |
Q |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43094952 |
tgtgaaacttgaacaataaatttaaatgttgaaatcaaatttgcagactaaattgaaatttctaacttctaacttagaattaattttaactcttcaaaat |
43095051 |
T |
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| Q |
791 |
cacttttgactctactaaaattgaatccaaatacctactatttaacaatataatccttagtctttacacacaacaaagaggcaataaagaaatcatctag |
890 |
Q |
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| T |
43095052 |
cacttttgactctactaaaattgaatccaaatatctactatttaacaatataatccttagtctttacgcacaataaagaggcaataaagaaatcatctag |
43095151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 819
Target Start/End: Complemental strand, 35728892 - 35728845
Alignment:
| Q |
772 |
aattttaactcttcaaaatcacttttgactctactaaaattgaatcca |
819 |
Q |
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|||||||| ||||||||||||||||||||||| | |||| |||||||| |
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| T |
35728892 |
aattttaattcttcaaaatcacttttgactcttccaaaagtgaatcca |
35728845 |
T |
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