View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20647_low_10 (Length: 254)

Name: NF20647_low_10
Description: NF20647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20647_low_10
NF20647_low_10
[»] chr1 (6 HSPs)
chr1 (1-234)||(31507080-31507315)
chr1 (1-78)||(39939292-39939369)
chr1 (6-81)||(7438863-7438938)
chr1 (26-81)||(31507353-31507408)
chr1 (39-81)||(3360511-3360553)
chr1 (39-81)||(7438818-7438860)
[»] chr4 (5 HSPs)
chr4 (1-71)||(55521036-55521106)
chr4 (1-81)||(24799372-24799452)
chr4 (22-77)||(40197916-40197971)
chr4 (22-81)||(55520943-55521002)
chr4 (21-77)||(34049222-34049278)
[»] chr7 (2 HSPs)
chr7 (1-81)||(35582193-35582273)
chr7 (3-81)||(30458113-30458191)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-80)||(48578-48657)
[»] chr5 (1 HSPs)
chr5 (8-81)||(38739062-38739135)
[»] chr8 (2 HSPs)
chr8 (1-78)||(951276-951353)
chr8 (28-81)||(951393-951446)
[»] chr6 (1 HSPs)
chr6 (22-77)||(11004307-11004362)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31507315 - 31507080
Alignment:
Q  1 ttcagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaannnnnnnatattatagttt 100  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||       ||||||||||||    
T  31507315 ttcaacggcagttaactgtcgttggggttaaacttattatttcatagtgttttttagatttgtttgaagtgggaaaaaaaattttgttatattatagttt 31507216  T
Q  101 gtatgtctttctttgtagtttacatcttgtgccacaaaaatcaaacacac--acatatgagaattaattagacctcatttggtataagaaatgtgacatt 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31507215 gtatgtctttctttgtactttacatcttgtgccacaaaaatcaaacacacgcacatatgagaattaattagacctcatttggtataagaaatgtgacatt 31507116  T
Q  199 taaaaataccattccattgtagtcgttagcaccttt 234  Q
    ||||||||||||||||||||||||||||||||||||    
T  31507115 taaaaataccattccattgtagtcgttagcaccttt 31507080  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39939292 - 39939369
Alignment:
Q  1 ttcagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaa 78  Q
    |||||| |||||||||| | ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||    
T  39939292 ttcagcagcagttaactgttgttggggttaaacttatcatttcatggtgtttcttagctttgtttgaagtgggaaaaa 39939369  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 7438863 - 7438938
Alignment:
Q  6 cggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    ||||||| ||||  |||| ||||||||||| | |||||||||| ||| |||| ||||| |||||||| ||||||||    
T  7438863 cggcagtcaactgccgtttgggttaaacttgtcatttcatagtattttttagctttgtatgaagtgggaaaaacaa 7438938  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 31507353 - 31507408
Alignment:
Q  26 ggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    |||||||||||| ||||||| ||||||||||| ||||| |||| ||| ||||||||    
T  31507353 ggttaaacttatcatttcatggtgtttcttagttttgtgtgaaatgggaaaaacaa 31507408  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 3360511 - 3360553
Alignment:
Q  39 atttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    ||||||| ||||||||||  |||||||||||||||||||||||    
T  3360511 atttcatggtgtttcttaactttgtttgaagtggaaaaaacaa 3360553  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 7438860 - 7438818
Alignment:
Q  39 atttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    |||| |||||||||||||| |||||||||||||| ||||||||    
T  7438860 attttatagtgtttcttagctttgtttgaagtgggaaaaacaa 7438818  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 55521036 - 55521106
Alignment:
Q  1 ttcagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtg 71  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  55521036 ttcatcggcagttaactttcgttggggttaaacttgttatttcatggtgtttcttagctttgtttgaagtg 55521106  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24799372 - 24799452
Alignment:
Q  1 ttcagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    |||||| |||||||||| ||||||  ||||||||| |  |||||| |||||||||   |||||||||||||| ||||||||    
T  24799372 ttcagcagcagttaactgtcgttgaagttaaacttgtgttttcatggtgtttcttgactttgtttgaagtgggaaaaacaa 24799452  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 40197916 - 40197971
Alignment:
Q  22 ttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaa 77  Q
    ||||||||||| |||| |||| ||||||||||||||  |||| |||||||||||||    
T  40197916 ttggggttaaatttatcattttatagtgtttcttagcattgtgtgaagtggaaaaa 40197971  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 55521002 - 55520943
Alignment:
Q  22 ttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    |||||| ||||||| | ||||||| ||||||||||| ||||| |||||||| ||||||||    
T  55521002 ttggggctaaacttgtcatttcatggtgtttcttagctttgtgtgaagtgggaaaaacaa 55520943  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 34049222 - 34049278
Alignment:
Q  21 gttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaa 77  Q
    |||| |||||||| | | ||||||| ||||||||||| || ||||||||||||||||    
T  34049222 gttgaggttaaacctttcatttcatggtgtttcttagtttcgtttgaagtggaaaaa 34049278  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 35582273 - 35582193
Alignment:
Q  1 ttcagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    ||||||| || |||||| ||| ||| ||||||||||||||||||  ||||||||||| |||||||||||||| ||||||||    
T  35582273 ttcagcgacaattaactgtcgatggcgttaaacttattatttcacggtgtttcttagctttgtttgaagtgggaaaaacaa 35582193  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 30458191 - 30458113
Alignment:
Q  3 cagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    |||||||| |||||| ||||| || |||||||| | ||||||||||||||| ||| |||||||||||||| ||||||||    
T  30458191 cagcggcaattaactgtcgttaggattaaacttgtcatttcatagtgtttcgtagctttgtttgaagtgggaaaaacaa 30458113  T

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Target: scaffold0027 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 48657 - 48578
Alignment:
Q  1 ttcagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaaca 80  Q
    |||| ||||| |||||||||||||||||||||||| |||||| || ||||| |||||  ||||||||||||| |||||||    
T  48657 ttcaacggcatttaactatcgttggggttaaacttgttattttatggtgttccttagcattgtttgaagtgggaaaaaca 48578  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 38739135 - 38739062
Alignment:
Q  8 gcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    |||||||||| ||||||| ||||||||  |||||||||  |||||||||  |||||||||||||| ||||||||    
T  38739135 gcagttaactgtcgttggagttaaactcgttatttcatcatgtttcttaaatttgtttgaagtgggaaaaacaa 38739062  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 951353 - 951276
Alignment:
Q  1 ttcagcggcagttaactatcgttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaa 78  Q
    |||||||||||||||||  | ||| | |||||||||| |||||||  | |||||||| |||||||||||| |||||||    
T  951353 ttcagcggcagttaactgccattgagattaaacttatcatttcatgatatttcttagctttgtttgaagtagaaaaaa 951276  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 951393 - 951446
Alignment:
Q  28 ttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaaacaa 81  Q
    ||||| || ||||||||||||||||||||| || || |||||||||||||||||    
T  951393 ttaaatttgttatttcatagtgtttcttagcttcgtgtgaagtggaaaaaacaa 951446  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 11004307 - 11004362
Alignment:
Q  22 ttggggttaaacttattatttcatagtgtttcttaggtttgtttgaagtggaaaaa 77  Q
    |||||||||||||| | |||| ||| |||||||||| ||||| |||||||||||||    
T  11004307 ttggggttaaacttgtcattttataatgtttcttagctttgtgtgaagtggaaaaa 11004362  T

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